CNEr 1.6.2
Ge Tan
| Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/CNEr | | Last Changed Rev: 111508 / Revision: 116712 | | Last Changed Date: 2015-12-15 08:48:05 -0800 (Tue, 15 Dec 2015) |
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |  |
| moscato1 | Windows Server 2008 R2 Standard (64-bit) / x64 | OK | OK | WARNINGS | [ OK ] | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | WARNINGS | OK | |
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### Running command:
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### cd CNEr.buildbin-libdir/CNEr && zip -r ../../CNEr_1.6.2.zip . & cd ../..
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adding: CNErBuild/ (208 bytes security) (stored 0%)
adding: CNErBuild/CNEr.R (188 bytes security) (deflated 75%)
adding: CNErBuild/demo.R (188 bytes security) (deflated 69%)
adding: CNErBuild/horizonPlot.R (188 bytes security) (deflated 55%)
adding: data/ (208 bytes security) (stored 0%)
adding: data/axisTrack.rda (188 bytes security) (stored 0%)
adding: data/axtDanRer7Hg19.rda (188 bytes security) (deflated 0%)
adding: data/axtHg19DanRer7.rda (188 bytes security) (deflated 0%)
adding: data/cneBlatedDanRer7Hg19.rda (188 bytes security) (deflated 0%)
adding: data/CNEDanRer7Hg19.rda (188 bytes security) (deflated 0%)
adding: data/CNEHg19DanRer7.rda (188 bytes security) (deflated 0%)
adding: data/cneHg19DanRer7_45_50.rda (188 bytes security) (deflated 20%)
adding: data/cneHg19DanRer7_48_50.rda (188 bytes security) (deflated 21%)
adding: data/cneHg19DanRer7_49_50.rda (188 bytes security) (deflated 20%)
adding: data/cpgIslands.rda (188 bytes security) (stored 0%)
adding: data/finalCNE.rda (188 bytes security) (stored 0%)
adding: data/ideoTrack.rda (188 bytes security) (deflated 1%)
adding: data/qSizesDanRer7.rda (188 bytes security) (deflated 1%)
adding: data/qSizesHg19.rda (188 bytes security) (stored 0%)
adding: data/refGenes.rda (188 bytes security) (stored 0%)
adding: DESCRIPTION (188 bytes security) (deflated 44%)
adding: doc/ (208 bytes security) (stored 0%)
adding: doc/CNEr.html (188 bytes security) (deflated 58%)
adding: doc/CNEr.Rmd (188 bytes security) (deflated 68%)
adding: doc/index.html (188 bytes security) (deflated 56%)
adding: extdata/ (208 bytes security) (stored 0%)
adding: extdata/cne.sqlite (188 bytes security) (deflated 55%)
adding: extdata/danRer7.hg19.net.axt (188 bytes security) (deflated 71%)
adding: extdata/filter_regions.danRer7.bed (188 bytes security) (deflated 74%)
adding: extdata/filter_regions.hg19.bed (188 bytes security) (deflated 77%)
adding: extdata/hg19.danRer7.net.axt (188 bytes security) (deflated 69%)
adding: help/ (208 bytes security) (stored 0%)
adding: help/aliases.rds (188 bytes security) (stored 0%)
adding: help/AnIndex (188 bytes security) (deflated 77%)
adding: help/CNEr.rdb (188 bytes security) (deflated 1%)
adding: help/CNEr.rdx (188 bytes security) (stored 0%)
adding: help/paths.rds (188 bytes security) (stored 0%)
adding: html/ (208 bytes security) (stored 0%)
adding: html/00Index.html (188 bytes security) (deflated 85%)
adding: html/R.css (188 bytes security) (deflated 75%)
adding: INDEX (188 bytes security) (deflated 63%)
adding: libs/ (208 bytes security) (stored 0%)
adding: libs/i386/ (208 bytes security) (stored 0%)
adding: libs/i386/CNEr.dll (188 bytes security) (deflated 54%)
adding: libs/x64/ (208 bytes security) (stored 0%)
adding: libs/x64/CNEr.dll (188 bytes security) (deflated 54%)
adding: LICENSE (188 bytes security) (deflated 44%)
adding: MD5 (188 bytes security) (deflated 46%)
adding: Meta/ (208 bytes security) (stored 0%)
adding: Meta/data.rds (188 bytes security) (stored 0%)
adding: Meta/hsearch.rds (188 bytes security) (stored 0%)
adding: Meta/links.rds (188 bytes security) (stored 0%)
adding: Meta/nsInfo.rds (188 bytes security) (stored 0%)
adding: Meta/package.rds (188 bytes security) (stored 0%)
adding: Meta/Rd.rds (188 bytes security) (stored 0%)
adding: Meta/vignette.rds (188 bytes security) (stored 0%)
adding: NAMESPACE (188 bytes security) (deflated 68%)
adding: obsolete/ (208 bytes security) (stored 0%)
adding: obsolete/ceScan.r (188 bytes security) (deflated 67%)
adding: obsolete/ceScanR.r (188 bytes security) (deflated 69%)
adding: obsolete/class.r (188 bytes security) (deflated 74%)
adding: obsolete/CNEr.Rnw (188 bytes security) (deflated 69%)
adding: obsolete/src/ (208 bytes security) (stored 0%)
adding: obsolete/src/ceScan.c (188 bytes security) (deflated 68%)
adding: obsolete/src/ceScanBranch1.c (188 bytes security) (deflated 73%)
adding: obsolete/src/ceScanBranch2.c (188 bytes security) (deflated 72%)
adding: obsolete/src/compile (188 bytes security) (deflated 92%)
adding: R/ (208 bytes security) (stored 0%)
adding: R/CNEr (188 bytes security) (deflated 41%)
adding: R/CNEr.rdb (188 bytes security) (deflated 33%)
adding: R/CNEr.rdx (188 bytes security) (deflated 1%)
adding: scripts/ (208 bytes security) (stored 0%)
adding: scripts/pipeline.r (188 bytes security) (deflated 60%)
adding: scripts/prepareFiles.r (188 bytes security) (deflated 64%)
adding: scripts/usePrecomputed.r (188 bytes security) (deflated 42%)
adding: unitTests/ (208 bytes security) (stored 0%)
adding: unitTests/test_reverseCigar.R (188 bytes security) (deflated 57%)
adding: unitTests/test_subAxt.R (188 bytes security) (deflated 53%)