CNAnorm 1.16.0
Stefano Berri
| Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/CNAnorm | | Last Changed Rev: 109589 / Revision: 116712 | | Last Changed Date: 2015-10-13 12:36:05 -0700 (Tue, 13 Oct 2015) |
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| moscato1 | Windows Server 2008 R2 Standard (64-bit) / x64 | NotNeeded | OK | OK | OK | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | [ OK ] | |
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### Running command:
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### rm -rf CNAnorm.buildbin-libdir && mkdir CNAnorm.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CNAnorm_1.16.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CNAnorm.buildbin-libdir
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>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=CNAnorm.buildbin-libdir CNAnorm_1.16.0.tar.gz'
>>>>>>>
* installing *source* package ‘CNAnorm’ ...
** libs
gfortran-4.8 -fPIC -g -O2 -Wall -c daxpy.f -o daxpy.o
gfortran-4.8 -fPIC -g -O2 -Wall -c ddot.f -o ddot.o
gfortran-4.8 -fPIC -g -O2 -Wall -c dgbfa.f -o dgbfa.o
gfortran-4.8 -fPIC -g -O2 -Wall -c dgbsl.f -o dgbsl.o
gfortran-4.8 -fPIC -g -O2 -Wall -c dscal.f -o dscal.o
gfortran-4.8 -fPIC -g -O2 -Wall -c dsmooth.f -o dsmooth.o
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dsmooth.f:62.20:
do 10 i=1,n-1
1
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dsmooth.f:70.7:
& diff(i-1)*diff(i+1) .lt. 0.) isplit(i)=1
1
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dsmooth.f: In function ‘amed3’:
dsmooth.f:50:0: warning: ‘__result_amed3’ may be used uninitialized in this function [-Wmaybe-uninitialized]
function amed3(a,b,c)
^
gfortran-4.8 -fPIC -g -O2 -Wall -c idamax.f -o idamax.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o CNAnorm.so daxpy.o ddot.o dgbfa.o dgbsl.o dscal.o dsmooth.o idamax.o -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.2-bioc/meat/CNAnorm.buildbin-libdir/CNAnorm/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (CNAnorm)
>>>>>>>
>>>>>>> FIXING LINKS FOR CNAnorm.buildbin-libdir/CNAnorm/libs//CNAnorm.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgcc_s.1.dylib" "CNAnorm.buildbin-libdir/CNAnorm/libs//CNAnorm.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgfortran.3.dylib" "CNAnorm.buildbin-libdir/CNAnorm/libs//CNAnorm.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.5.2.dylib" "CNAnorm.buildbin-libdir/CNAnorm/libs//CNAnorm.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.dylib" "CNAnorm.buildbin-libdir/CNAnorm/libs//CNAnorm.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libquadmath.0.dylib" "CNAnorm.buildbin-libdir/CNAnorm/libs//CNAnorm.so"