rCGH 0.99.7
Frederic Commo
| Snapshot Date: 2015-08-19 16:24:33 -0700 (Wed, 19 Aug 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/rCGH | | Last Changed Rev: 106975 / Revision: 107602 | | Last Changed Date: 2015-08-01 09:35:29 -0700 (Sat, 01 Aug 2015) |
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK | |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | OK | OK | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK | |
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### Running command:
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### rm -rf rCGH.buildbin-libdir rCGH.Rcheck && mkdir rCGH.buildbin-libdir rCGH.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=rCGH.buildbin-libdir rCGH_0.99.7.tar.gz >rCGH.Rcheck\00install.out 2>&1 && cp rCGH.Rcheck\00install.out rCGH-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=rCGH.buildbin-libdir --install="check:rCGH-install.out" --force-multiarch --no-vignettes --timings rCGH_0.99.7.tar.gz
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* using log directory 'D:/biocbld/bbs-3.2-bioc/meat/rCGH.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'rCGH/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'rCGH' version '0.99.7'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'rCGH' can be installed ... OK
* checking installed package size ... NOTE
installed size is 5.1Mb
sub-directories of 1Mb or more:
data 2.8Mb
extdata 1.2Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [403s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
byGeneTable 42.32 0.27 43.77
multiplot 39.97 0.26 40.23
plotProfile 39.17 0.21 39.37
rCGH-package 39.11 0.09 39.20
recenter 38.39 0.21 38.60
plotLOH 36.50 0.18 36.77
segmentCGH 35.02 0.12 35.14
EMnormalize 33.77 0.16 33.95
view 33.01 0.12 33.15
plotDensity 30.95 0.16 31.11
adjustSignal 11.79 0.03 11.82
** running examples for arch 'x64' ... [397s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
byGeneTable 43.20 0.19 43.38
plotProfile 39.87 0.17 40.14
multiplot 38.88 0.15 39.10
rCGH-package 38.84 0.17 39.03
plotLOH 38.02 0.11 38.13
segmentCGH 34.96 0.20 35.16
recenter 35.00 0.16 35.18
view 34.28 0.13 34.41
plotDensity 32.21 0.13 32.47
EMnormalize 30.13 0.14 30.28
adjustSignal 10.92 0.08 11.00
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'runTests.R' [57s]
[57s] OK
** running tests for arch 'x64' ...
Running 'runTests.R' [83s]
[84s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'D:/biocbld/bbs-3.2-bioc/meat/rCGH.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'rCGH' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'rCGH' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'rCGH' as rCGH_0.99.7.zip
* DONE (rCGH)