phenoDist 1.17.0
Xian Zhang
| Snapshot Date: 2015-08-19 16:24:33 -0700 (Wed, 19 Aug 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/phenoDist | | Last Changed Rev: 102594 / Revision: 107602 | | Last Changed Date: 2015-04-16 13:02:44 -0700 (Thu, 16 Apr 2015) |
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | ERROR | skipped | | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | [ ERROR ] | skipped | skipped | |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | ERROR | skipped | skipped | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | ERROR | skipped | skipped | |
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### Running command:
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### chmod a+r phenoDist -R && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data phenoDist
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* checking for file 'phenoDist/DESCRIPTION' ... OK
* preparing 'phenoDist':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ...Warning: running command '"D:/biocbld/bbs-3.2-bioc/R/bin/x64/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1
ERROR
Loading required package: EBImage
Attaching package: 'EBImage'
The following object is masked _by_ '.GlobalEnv':
display
Loading required package: cellHTS2
Loading required package: RColorBrewer
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, as.vector, cbind, colnames, do.call, duplicated,
eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply,
mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
rank, rbind, rep.int, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unlist, unsplit
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Attaching package: 'Biobase'
The following object is masked from 'package:EBImage':
channel
Loading required package: genefilter
Attaching package: 'genefilter'
The following object is masked from 'package:base':
anyNA
Loading required package: splots
Loading required package: vsn
Loading required package: hwriter
Loading required package: locfit
locfit 1.5-9.1 2013-03-22
Loading required package: grid
trying URL 'http://www.ebi.ac.uk/˜gpau/imageHTS/screens/kimorph/conf/imageconf.txt'
Warning in fileHTS(x, type = type, ..., access = access) :
cannot download the file pointed by "http://www.ebi.ac.uk/˜gpau/imageHTS/screens/kimorph/conf/imageconf.txt" to the location "D:/biocbld/bbs-3.2-bioc/tmpdir/RtmpKWsuyi/kimorph/conf/imageconf.txt"
Error: processing vignette 'phenoDist.Rnw' failed with diagnostics:
chunk 3 (label = imageHTSSetup)
Error in readHTS(x, type = "file", filename = filename, access = access, :
cannot find filename=D:/biocbld/bbs-3.2-bioc/tmpdir/RtmpKWsuyi/kimorph/conf/imageconf.txt
Execution halted