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BioC 3.2: INSTALL report for openCyto on oaxaca

This page was generated on 2015-10-27 17:40:57 -0400 (Tue, 27 Oct 2015).

Package 731/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
openCyto 1.8.1
Mike Jiang
Snapshot Date: 2015-10-26 19:24:07 -0400 (Mon, 26 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/openCyto
Last Changed Rev: 109947 / Revision: 109947
Last Changed Date: 2015-10-26 18:02:35 -0400 (Mon, 26 Oct 2015)
linux1.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  ERROR  ERROR  skipped 
windows1.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  ERROR  ERROR  skipped  skipped 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  ERROR  ERROR  skipped  skipped 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64 [ ERROR ] ERROR  skipped  skipped 

Summary

Package: openCyto
Version: 1.8.1
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL openCyto
StartedAt: 2015-10-26 20:34:37 -0400 (Mon, 26 Oct 2015)
EndedAt: 2015-10-26 20:34:44 -0400 (Mon, 26 Oct 2015)
EllapsedTime: 7.0 seconds
RetCode: 1
Status:  ERROR 

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL openCyto
###
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##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/3.2/Resources/library’
* installing *source* package ‘openCyto’ ...
** libs
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include"   -fPIC  -Wall -mtune=core2 -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include"   -fPIC  -Wall -mtune=core2 -g -O2  -c misc.cpp -o misc.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include"   -fPIC  -Wall -mtune=core2 -g -O2  -c unlockNamespace.c -o unlockNamespace.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o openCyto.so RcppExports.o misc.o unlockNamespace.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/3.2/Resources/library/openCyto/libs
** R
** inst
** preparing package for lazy loading
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
  namespace ‘flowStats’ 3.28.1 is being loaded, but >= 3.29.1 is required
ERROR: lazy loading failed for package ‘openCyto’
* removing ‘/Library/Frameworks/R.framework/Versions/3.2/Resources/library/openCyto’
* restoring previous ‘/Library/Frameworks/R.framework/Versions/3.2/Resources/library/openCyto’