BioC 3.2: CHECK report for nnNorm on windows1.bioconductor.org

Package: nnNorm

Version: 2.34.0

Command: rm -rf nnNorm.buildbin-libdir nnNorm.Rcheck && mkdir nnNorm.buildbin-libdir nnNorm.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=nnNorm.buildbin-libdir nnNorm_2.34.0.tar.gz >nnNorm.Rcheck\00install.out 2>&1 && cp nnNorm.Rcheck\00install.out nnNorm-install.out && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=nnNorm.buildbin-libdir --install="check:nnNorm-install.out" --force-multiarch --no-vignettes --timings nnNorm_2.34.0.tar.gz

StartedAt: 2015-10-27 04:04:25 -0400 (Tue, 27 Oct 2015)

EndedAt: 2015-10-27 04:08:47 -0400 (Tue, 27 Oct 2015)

EllapsedTime: 262.4 seconds

RetCode: 0

Status:  OK

CheckDir: nnNorm.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf nnNorm.buildbin-libdir nnNorm.Rcheck && mkdir nnNorm.buildbin-libdir nnNorm.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=nnNorm.buildbin-libdir nnNorm_2.34.0.tar.gz >nnNorm.Rcheck\00install.out 2>&1 && cp nnNorm.Rcheck\00install.out nnNorm-install.out  && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=nnNorm.buildbin-libdir --install="check:nnNorm-install.out" --force-multiarch --no-vignettes --timings nnNorm_2.34.0.tar.gz
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* using log directory 'C:/biocbld/bbs-3.2-bioc/meat/nnNorm.Rcheck'
* using R version 3.2.2 Patched (2015-08-16 r69094)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'nnNorm/DESCRIPTION' ... OK
* this is package 'nnNorm' version '2.34.0'
* checking package namespace information ... NOTE
  Namespace with empty importFrom: 'methods'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'nnNorm' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  'marray'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [118s] OK
Examples with CPU or elapsed time > 5s
                   user system elapsed
maNormNN          59.46   0.03   59.49
compNorm          32.69   0.03   32.72
detectSpatialBias 25.37   0.02   25.39
** running examples for arch 'x64' ... [116s] OK
Examples with CPU or elapsed time > 5s
                   user system elapsed
maNormNN          59.27   0.00   59.26
compNorm          31.27   0.01   31.28
detectSpatialBias 24.51   0.02   24.55
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'C:/biocbld/bbs-3.2-bioc/meat/nnNorm.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'nnNorm' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'nnNorm' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'nnNorm' as nnNorm_2.34.0.zip
* DONE (nnNorm)

name	user	system	elapsed
compNorm	32.69	0.03	32.72
detectSpatialBias	25.37	0.02	25.39
maNormNN	59.46	0.03	59.49

name	user	system	elapsed
compNorm	31.27	0.01	31.28
detectSpatialBias	24.51	0.02	24.55
maNormNN	59.27	0.00	59.26