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BioC 3.2: BUILD BIN report for mgsa on oaxaca

This page was generated on 2015-10-27 17:39:24 -0400 (Tue, 27 Oct 2015).

Package 640/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mgsa 1.18.0
Sebastian Bauer
Snapshot Date: 2015-10-26 19:24:07 -0400 (Mon, 26 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/mgsa
Last Changed Rev: 109589 / Revision: 109947
Last Changed Date: 2015-10-13 15:36:05 -0400 (Tue, 13 Oct 2015)
linux1.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
windows1.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: mgsa
Version: 1.18.0
Command: rm -rf mgsa.buildbin-libdir && mkdir mgsa.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh mgsa_1.18.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R mgsa.buildbin-libdir
StartedAt: 2015-10-27 10:41:11 -0400 (Tue, 27 Oct 2015)
EndedAt: 2015-10-27 10:42:12 -0400 (Tue, 27 Oct 2015)
EllapsedTime: 60.8 seconds
RetCode: 0
Status:  OK 
PackageFile: mgsa_1.18.0.tgz
PackageFileSize: 413.1 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf mgsa.buildbin-libdir && mkdir mgsa.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh mgsa_1.18.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R mgsa.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=mgsa.buildbin-libdir mgsa_1.18.0.tar.gz'
>>>>>>> 

* installing *source* package ‘mgsa’ ...
configure: creating ./config.status
config.status: creating src/Makevars
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -I.  -fPIC  -Wall -mtune=core2 -g -O2  -c mgsa.c -o mgsa.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o mgsa.so mgsa.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.2-bioc/meat/mgsa.buildbin-libdir/mgsa/libs
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for ‘plot’ from package ‘graphics’ in package ‘mgsa’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (mgsa)


>>>>>>> 
>>>>>>> FIXING LINKS FOR mgsa.buildbin-libdir/mgsa/libs//mgsa.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgcc_s.1.dylib" "mgsa.buildbin-libdir/mgsa/libs//mgsa.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgfortran.3.dylib" "mgsa.buildbin-libdir/mgsa/libs//mgsa.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.5.2.dylib" "mgsa.buildbin-libdir/mgsa/libs//mgsa.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.dylib" "mgsa.buildbin-libdir/mgsa/libs//mgsa.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libquadmath.0.dylib" "mgsa.buildbin-libdir/mgsa/libs//mgsa.so"