BioC 3.2: BUILD report for methylumi on zin1

Package: methylumi

Version: 2.15.2

Command: /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data methylumi

StartedAt: 2015-08-23 17:58:06 -0700 (Sun, 23 Aug 2015)

EndedAt: 2015-08-23 18:02:09 -0700 (Sun, 23 Aug 2015)

EllapsedTime: 243.4 seconds

RetCode: 0

Status:  OK

PackageFile: methylumi_2.15.2.tar.gz

PackageFileSize: 5.894 MiB

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### Running command:
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###   /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data methylumi
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* checking for file ‘methylumi/DESCRIPTION’ ... OK
* preparing ‘methylumi’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... OK
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* looking to see if a ‘data/datalist’ file should be added
3 HumanMethylation27 samples found
0 HumanMethylation450 samples found
Attempting to extract protocolData() from list...
Determining chip type from IDAT protocolData...
Note: method with signature ‘methylData#character’ chosen for function ‘sampleNames<-’,
 target signature ‘MethyLumiQC#character’.
 "eSet#ANY" would also be valid
Background mean & SD estimated from 24156 probes
Loading required package: MASS

Attaching package: ‘MASS’

The following object is masked from ‘package:AnnotationDbi’:

    select

Background mean & SD estimated from 31000 probes
HumanMethylation27 data encountered, skipping...

Object Information:
MethyLumiSet (storageMode: lockedEnvironment)
assayData: 27578 features, 3 samples 
  element names: betas, methylated, methylated.OOB, pvals, unmethylated, unmethylated.OOB 
protocolData: none
phenoData
  sampleNames: 5318317007_A 5318317007_B 5318317007_C
  varLabels: barcode mu.Cy3 ... offset.Cy5 (9 total)
  varMetadata: labelDescription
featureData
  featureNames: cg00000292 cg00002426 ... cg27665659 (27578 total)
  fvarLabels: Probe_ID DESIGN COLOR_CHANNEL
  fvarMetadata: labelDescription
experimentData: use 'experimentData(object)'
Annotation: IlluminaHumanMethylation27k 
Major Operation History:
            submitted            finished
1 2015-08-23 18:02:06 2015-08-23 18:02:07
2 2015-08-23 18:02:07 2015-08-23 18:02:07
3 2015-08-23 18:02:07            18:02:08
                                            command
1            methylumIDAT(barcodes = getBarcodes())
2                         Subset of 27578 features.
3 methylumi.bgcorr(x = methylumIDAT(getBarcodes()))
* building ‘methylumi_2.15.2.tar.gz’