BioC 3.2: CHECK report for imageHTS on windows1.bioconductor.org

Package: imageHTS

Version: 1.20.0

Command: C:\biocbld\bbs-3.2-bioc\R\bin\R.exe --arch i386 CMD check --no-multiarch --no-vignettes --timings imageHTS_1.20.0.tar.gz

StartedAt: 2015-10-27 02:50:01 -0400 (Tue, 27 Oct 2015)

EndedAt: 2015-10-27 02:52:55 -0400 (Tue, 27 Oct 2015)

EllapsedTime: 174.4 seconds

RetCode: 0

Status:  OK

CheckDir: imageHTS.Rcheck

Warnings: 0

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### Running command:
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###   C:\biocbld\bbs-3.2-bioc\R\bin\R.exe --arch i386 CMD check --no-multiarch --no-vignettes --timings imageHTS_1.20.0.tar.gz
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* using log directory 'C:/biocbld/bbs-3.2-bioc/meat/imageHTS.Rcheck'
* using R version 3.2.2 Patched (2015-08-16 r69094)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'imageHTS/DESCRIPTION' ... OK
* this is package 'imageHTS' version '1.20.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .BBSoptions
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking whether package 'imageHTS' can be installed ... [12s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [61s] OK
Examples with CPU or elapsed time > 5s
                 user system elapsed
extractFeatures 19.02   1.38   20.40
countObjects     9.01   0.40    9.74
segmentWells     5.61   0.56    6.18
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/biocbld/bbs-3.2-bioc/meat/imageHTS.Rcheck/00check.log'
for details.

* installing *source* package 'imageHTS' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (imageHTS)

name	user	system	elapsed
collectCellFeatures	0	0	0
countObjects	9.01	0.40	9.74
extractFeatures	19.02	1.38	20.40
fileHTS	2.09	0.03	2.89
getImageConf	1.05	0.00	1.05
getUnames	2.75	0.03	2.78
getWellFeatures	3.05	0.00	3.11
highlightSegmentation	0	0	0
installCellPicker	1.53	0.02	1.54
makeCellHTS	0	0	0
parseDCF	0.00	0.02	0.02
parseImageConf	0.98	0.00	0.98
popCellPicker	0.99	0.00	0.99
prw2uname	0	0	0
readLearnTS	0	0	0
segmentATH	0	0	0
segmentWells	5.61	0.56	6.18
segmentYeastBF	2.39	0.70	3.09
summarizeWells	0	0	0
zprime	2.53	0.00	2.59