BioC 3.2: CHECK report for imageHTS on moscato1

Package: imageHTS

Version: 1.19.0

Command: D:\biocbld\bbs-3.2-bioc\R\bin\R.exe --arch i386 CMD check --no-multiarch --no-vignettes --timings imageHTS_1.19.0.tar.gz

StartedAt: 2015-07-30 05:04:39 -0700 (Thu, 30 Jul 2015)

EndedAt: 2015-07-30 05:08:55 -0700 (Thu, 30 Jul 2015)

EllapsedTime: 256.1 seconds

RetCode: 0

Status:  OK

CheckDir: imageHTS.Rcheck

Warnings: 0

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### Running command:
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###   D:\biocbld\bbs-3.2-bioc\R\bin\R.exe --arch i386 CMD check --no-multiarch --no-vignettes --timings imageHTS_1.19.0.tar.gz
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* using log directory 'D:/biocbld/bbs-3.2-bioc/meat/imageHTS.Rcheck'
* using R version 3.2.1 Patched (2015-07-19 r68700)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'imageHTS/DESCRIPTION' ... OK
* this is package 'imageHTS' version '1.19.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .BBSoptions
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking whether package 'imageHTS' can be installed ... [28s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [81s] OK
Examples with CPU or elapsed time > 5s
                 user system elapsed
extractFeatures 26.74   1.11   28.44
countObjects    11.15   0.44   12.49
segmentWells     6.80   0.53    7.34
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbld/bbs-3.2-bioc/meat/imageHTS.Rcheck/00check.log'
for details.

* installing *source* package 'imageHTS' ...
** R
** inst
** preparing package for lazy loading
Warning: replacing previous import by 'BiocGenerics::mad' when loading 'IRanges'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import by 'BiocGenerics::mad' when loading 'IRanges'
* DONE (imageHTS)

name	user	system	elapsed
collectCellFeatures	0	0	0
countObjects	11.15	0.44	12.49
extractFeatures	26.74	1.11	28.44
fileHTS	2.65	0.00	3.60
getImageConf	1.27	0.00	1.27
getUnames	3.16	0.00	3.17
getWellFeatures	4.34	0.00	4.33
highlightSegmentation	0	0	0
installCellPicker	1.95	0.00	1.98
makeCellHTS	0.01	0.00	0.02
parseDCF	0	0	0
parseImageConf	1.25	0.00	1.25
popCellPicker	1.23	0.00	1.23
prw2uname	0	0	0
readLearnTS	0	0	0
segmentATH	0	0	0
segmentWells	6.80	0.53	7.34
segmentYeastBF	4.09	0.62	4.71
summarizeWells	0	0	0
zprime	3.45	0.00	3.45