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BioC 3.2: INSTALL report for genoset on zin1

This page was generated on 2015-08-24 10:47:58 -0700 (Mon, 24 Aug 2015).

Package 416/1071HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
genoset 1.23.5
Peter M. Haverty
Snapshot Date: 2015-08-23 16:24:14 -0700 (Sun, 23 Aug 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/genoset
Last Changed Rev: 106677 / Revision: 107696
Last Changed Date: 2015-07-22 20:15:59 -0700 (Wed, 22 Jul 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64 [ OK ] OK  WARNINGS UNNEEDED, same version exists in internal repository
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: genoset
Version: 1.23.5
Command: /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD INSTALL genoset
StartedAt: 2015-08-23 17:03:34 -0700 (Sun, 23 Aug 2015)
EndedAt: 2015-08-23 17:03:48 -0700 (Sun, 23 Aug 2015)
EllapsedTime: 14.6 seconds
RetCode: 0
Status:  OK 

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD INSTALL genoset
###
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* installing to library ‘/home/biocbuild/bbs-3.2-bioc/R/library’
* installing *source* package ‘genoset’ ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c bounds.c -o bounds.o
gcc -std=gnu99 -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c init.c -o init.o
gcc -std=gnu99 -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c rangeSummaries.c -o rangeSummaries.o
gcc -std=gnu99 -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c utils.c -o utils.o
gcc -std=gnu99 -shared -L/home/biocbuild/bbs-3.2-bioc/R/lib -L/usr/local/lib -o genoset.so bounds.o init.o rangeSummaries.o utils.o -L/home/biocbuild/bbs-3.2-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.2-bioc/R/library/genoset/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning: subclass "GNCList" of class "GenomicRanges" is not local and cannot be updated for new inheritance information; consider setClassUnion()
Warning: subclass "GIntervalTree" of class "GenomicRanges" is not local and cannot be updated for new inheritance information; consider setClassUnion()
** help
Warning: bad markup (extra space?) at GenoSet.Rd:15:56
Warning: bad markup (extra space?) at baf2mbaf.Rd:10:61
Warning: bad markup (extra space?) at calcGC.Rd:10:58
Warning: bad markup (extra space?) at calcGC.Rd:13:59
Warning: bad markup (extra space?) at do_rledf_views.Rd:17:56
Warning: bad markup (extra space?) at gcCorrect.Rd:12:60
Warning: bad markup (extra space?) at genoPlot-methods.Rd:23:56
Warning: bad markup (extra space?) at genoPlot-methods.Rd:56:56
Warning: bad markup (extra space?) at genomeAxis.Rd:13:59
Warning: bad markup (extra space?) at runCBS.Rd:17:63
Warning: bad markup (extra space?) at segs2Rle.Rd:11:56
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (genoset)