BioC 3.2: BUILD BIN report for gcatest on oaxaca

Package: gcatest

Version: 1.0.0

Command: rm -rf gcatest.buildbin-libdir && mkdir gcatest.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh gcatest_1.0.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R gcatest.buildbin-libdir

StartedAt: 2015-10-27 10:05:41 -0400 (Tue, 27 Oct 2015)

EndedAt: 2015-10-27 10:06:13 -0400 (Tue, 27 Oct 2015)

EllapsedTime: 32.2 seconds

RetCode: 0

Status:  OK

PackageFile: gcatest_1.0.0.tgz

PackageFileSize: 3.318 MiB

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### Running command:
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###   rm -rf gcatest.buildbin-libdir && mkdir gcatest.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh gcatest_1.0.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R gcatest.buildbin-libdir
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=gcatest.buildbin-libdir gcatest_1.0.0.tar.gz'
>>>>>>> 

* installing *source* package ‘gcatest’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c assoc.c -o assoc.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c gcatest-init.c -o gcatest-init.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o gcatest.so assoc.o gcatest-init.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.2-bioc/meat/gcatest.buildbin-libdir/gcatest/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (gcatest)


>>>>>>> 
>>>>>>> FIXING LINKS FOR gcatest.buildbin-libdir/gcatest/libs//gcatest.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgcc_s.1.dylib" "gcatest.buildbin-libdir/gcatest/libs//gcatest.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgfortran.3.dylib" "gcatest.buildbin-libdir/gcatest/libs//gcatest.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.5.2.dylib" "gcatest.buildbin-libdir/gcatest/libs//gcatest.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.dylib" "gcatest.buildbin-libdir/gcatest/libs//gcatest.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libquadmath.0.dylib" "gcatest.buildbin-libdir/gcatest/libs//gcatest.so"