BioC 3.2: BUILD BIN report for flowWorkspace on perceval

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### Running command:
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###   rm -rf flowWorkspace.buildbin-libdir && mkdir flowWorkspace.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh flowWorkspace_3.16.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R flowWorkspace.buildbin-libdir
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=flowWorkspace.buildbin-libdir flowWorkspace_3.16.0.tar.gz'
>>>>>>> 

* installing *source* package ‘flowWorkspace’ ...
checking for g++... g++
checking whether the C++ compiler works... yes
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configure: setting protobuf flags...
configure: No directory was specified for --with-protobuf. Using bundled protocol buffer.
found  protobuf-2.6.0  header sources and tar archive;using what is there.
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building protobuf...
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libtool: link: g++ -dynamiclib  -o .libs/libprotobuf.9.dylib  google/protobuf/stubs/.libs/atomicops_internals_x86_gcc.o google/protobuf/stubs/.libs/atomicops_internals_x86_msvc.o google/protobuf/stubs/.libs/common.o google/protobuf/stubs/.libs/once.o google/protobuf/stubs/.libs/stringprintf.o google/protobuf/.libs/extension_set.o google/protobuf/.libs/generated_message_util.o google/protobuf/.libs/message_lite.o google/protobuf/.libs/repeated_field.o google/protobuf/.libs/wire_format_lite.o google/protobuf/io/.libs/coded_stream.o google/protobuf/io/.libs/zero_copy_stream.o google/protobuf/io/.libs/zero_copy_stream_impl_lite.o google/protobuf/stubs/.libs/strutil.o google/protobuf/stubs/.libs/substitute.o google/protobuf/stubs/.libs/structurally_valid.o google/protobuf/.libs/descriptor.o google/protobuf/.libs/descriptor.pb.o google/protobuf/.libs/descriptor_database.o google/protobuf/.libs/dynamic_message.o google/protobuf/.libs/extension_set_heavy.o google/protobuf/.libs/generated_message_reflection.o google/protobuf/.libs/message.o google/protobuf/.libs/reflection_ops.o google/protobuf/.libs/service.o google/protobuf/.libs/text_format.o google/protobuf/.libs/unknown_field_set.o google/protobuf/.libs/wire_format.o google/protobuf/io/.libs/gzip_stream.o google/protobuf/io/.libs/printer.o google/protobuf/io/.libs/strtod.o google/protobuf/io/.libs/tokenizer.o google/protobuf/io/.libs/zero_copy_stream_impl.o   -lz    -install_name  /usr/local/lib/libprotobuf.9.dylib -compatibility_version 10 -current_version 10.0 -Wl,-single_module
libtool: link: (cd ".libs" && rm -f "libprotobuf.dylib" && ln -s "libprotobuf.9.dylib" "libprotobuf.dylib")
libtool: link: (cd ".libs" && rm -f "libprotobuf.9.0.0.dylib" && ln -s "libprotobuf.9.dylib" "libprotobuf.9.0.0.dylib")
libtool: link: ( cd ".libs" && rm -f "libprotobuf.la" && ln -s "../libprotobuf.la" "libprotobuf.la" )
configure: Using the following compilation and linking flags for flowWorkspace
configure:    PKG_CPPFLAGS=-I/usr/include/libxml2 -Iprotobuf-2.6.0/src
configure:    PKG_LIBS=-lxml2 -lz -lpthread -licucore -lm 
configure: creating ./config.status
config.status: creating src/Makevars
** libs
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c GatingHierarchy.cpp -o GatingHierarchy.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c GatingSet.cpp -o GatingSet.o
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/vector.hpp: In function ‘void boost::serialization::load(Archive&, std::vector<bool, Allocator>&, unsigned int) [with Archive = boost::archive::binary_iarchive, Allocator = std::allocator<bool>]’:
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/split_free.hpp:58:   instantiated from ‘static void boost::serialization::free_loader<Archive, T>::invoke(Archive&, T&, unsigned int) [with Archive = boost::archive::binary_iarchive, T = std::vector<bool, std::allocator<bool> >]’
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/split_free.hpp:74:   instantiated from ‘void boost::serialization::split_free(Archive&, T&, unsigned int) [with Archive = boost::archive::binary_iarchive, T = std::vector<bool, std::allocator<bool> >]’
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/vector.hpp:231:   instantiated from ‘void boost::serialization::serialize(Archive&, std::vector<bool, Allocator>&, unsigned int) [with Archive = boost::archive::binary_iarchive, Allocator = std::allocator<bool>]’
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/serialization.hpp:128:   instantiated from ‘void boost::serialization::serialize_adl(Archive&, T&, unsigned int) [with Archive = boost::archive::binary_iarchive, T = std::vector<bool, std::allocator<bool> >]’
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/iserializer.hpp:184:   instantiated from ‘void boost::archive::detail::iserializer<Archive, T>::load_object_data(boost::archive::detail::basic_iarchive&, void*, unsigned int) const [with Archive = boost::archive::binary_iarchive, T = std::vector<bool, std::allocator<bool> >]’
GatingSet.cpp:786:   instantiated from here
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/vector.hpp:216: warning: comparison between signed and unsigned integer expressions
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/vector.hpp: In function ‘void boost::serialization::load(Archive&, std::vector<bool, Allocator>&, unsigned int) [with Archive = boost::archive::text_iarchive, Allocator = std::allocator<bool>]’:
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/split_free.hpp:58:   instantiated from ‘static void boost::serialization::free_loader<Archive, T>::invoke(Archive&, T&, unsigned int) [with Archive = boost::archive::text_iarchive, T = std::vector<bool, std::allocator<bool> >]’
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/split_free.hpp:74:   instantiated from ‘void boost::serialization::split_free(Archive&, T&, unsigned int) [with Archive = boost::archive::text_iarchive, T = std::vector<bool, std::allocator<bool> >]’
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/vector.hpp:231:   instantiated from ‘void boost::serialization::serialize(Archive&, std::vector<bool, Allocator>&, unsigned int) [with Archive = boost::archive::text_iarchive, Allocator = std::allocator<bool>]’
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/serialization.hpp:128:   instantiated from ‘void boost::serialization::serialize_adl(Archive&, T&, unsigned int) [with Archive = boost::archive::text_iarchive, T = std::vector<bool, std::allocator<bool> >]’
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/iserializer.hpp:184:   instantiated from ‘void boost::archive::detail::iserializer<Archive, T>::load_object_data(boost::archive::detail::basic_iarchive&, void*, unsigned int) const [with Archive = boost::archive::text_iarchive, T = std::vector<bool, std::allocator<bool> >]’
GatingSet.cpp:786:   instantiated from here
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/vector.hpp:216: warning: comparison between signed and unsigned integer expressions
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/vector.hpp: In function ‘void boost::serialization::load(Archive&, std::vector<bool, Allocator>&, unsigned int) [with Archive = boost::archive::xml_iarchive, Allocator = std::allocator<bool>]’:
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/split_free.hpp:58:   instantiated from ‘static void boost::serialization::free_loader<Archive, T>::invoke(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = std::vector<bool, std::allocator<bool> >]’
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/split_free.hpp:74:   instantiated from ‘void boost::serialization::split_free(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = std::vector<bool, std::allocator<bool> >]’
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/vector.hpp:231:   instantiated from ‘void boost::serialization::serialize(Archive&, std::vector<bool, Allocator>&, unsigned int) [with Archive = boost::archive::xml_iarchive, Allocator = std::allocator<bool>]’
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/serialization.hpp:128:   instantiated from ‘void boost::serialization::serialize_adl(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = std::vector<bool, std::allocator<bool> >]’
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/iserializer.hpp:184:   instantiated from ‘void boost::archive::detail::iserializer<Archive, T>::load_object_data(boost::archive::detail::basic_iarchive&, void*, unsigned int) const [with Archive = boost::archive::xml_iarchive, T = std::vector<bool, std::allocator<bool> >]’
GatingSet.cpp:786:   instantiated from here
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/vector.hpp:216: warning: comparison between signed and unsigned integer expressions
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c GatingSet.pb.cc -o GatingSet.pb.o
protobuf-2.6.0/src/google/protobuf/wire_format_lite_inl.h: In static member function ‘static bool google::protobuf::internal::WireFormatLite::ReadPackedFixedSizePrimitive(google::protobuf::io::CodedInputStream*, google::protobuf::RepeatedField<T>*) [with CType = unsigned int, google::protobuf::internal::WireFormatLite::FieldType DeclaredType = TYPE_FIXED32]’:
protobuf-2.6.0/src/google/protobuf/wire_format_lite_inl.h:413:   instantiated from here
protobuf-2.6.0/src/google/protobuf/wire_format_lite_inl.h:383: warning: comparison between signed and unsigned integer expressions
protobuf-2.6.0/src/google/protobuf/wire_format_lite_inl.h:393: warning: comparison between signed and unsigned integer expressions
protobuf-2.6.0/src/google/protobuf/wire_format_lite_inl.h: In static member function ‘static bool google::protobuf::internal::WireFormatLite::ReadPackedFixedSizePrimitive(google::protobuf::io::CodedInputStream*, google::protobuf::RepeatedField<T>*) [with CType = long long unsigned int, google::protobuf::internal::WireFormatLite::FieldType DeclaredType = TYPE_FIXED64]’:
protobuf-2.6.0/src/google/protobuf/wire_format_lite_inl.h:414:   instantiated from here
protobuf-2.6.0/src/google/protobuf/wire_format_lite_inl.h:383: warning: comparison between signed and unsigned integer expressions
protobuf-2.6.0/src/google/protobuf/wire_format_lite_inl.h:393: warning: comparison between signed and unsigned integer expressions
protobuf-2.6.0/src/google/protobuf/wire_format_lite_inl.h: In static member function ‘static bool google::protobuf::internal::WireFormatLite::ReadPackedFixedSizePrimitive(google::protobuf::io::CodedInputStream*, google::protobuf::RepeatedField<T>*) [with CType = int, google::protobuf::internal::WireFormatLite::FieldType DeclaredType = TYPE_SFIXED32]’:
protobuf-2.6.0/src/google/protobuf/wire_format_lite_inl.h:415:   instantiated from here
protobuf-2.6.0/src/google/protobuf/wire_format_lite_inl.h:383: warning: comparison between signed and unsigned integer expressions
protobuf-2.6.0/src/google/protobuf/wire_format_lite_inl.h:393: warning: comparison between signed and unsigned integer expressions
protobuf-2.6.0/src/google/protobuf/wire_format_lite_inl.h: In static member function ‘static bool google::protobuf::internal::WireFormatLite::ReadPackedFixedSizePrimitive(google::protobuf::io::CodedInputStream*, google::protobuf::RepeatedField<T>*) [with CType = long long int, google::protobuf::internal::WireFormatLite::FieldType DeclaredType = TYPE_SFIXED64]’:
protobuf-2.6.0/src/google/protobuf/wire_format_lite_inl.h:416:   instantiated from here
protobuf-2.6.0/src/google/protobuf/wire_format_lite_inl.h:383: warning: comparison between signed and unsigned integer expressions
protobuf-2.6.0/src/google/protobuf/wire_format_lite_inl.h:393: warning: comparison between signed and unsigned integer expressions
protobuf-2.6.0/src/google/protobuf/wire_format_lite_inl.h: In static member function ‘static bool google::protobuf::internal::WireFormatLite::ReadPackedFixedSizePrimitive(google::protobuf::io::CodedInputStream*, google::protobuf::RepeatedField<T>*) [with CType = float, google::protobuf::internal::WireFormatLite::FieldType DeclaredType = TYPE_FLOAT]’:
protobuf-2.6.0/src/google/protobuf/wire_format_lite_inl.h:417:   instantiated from here
protobuf-2.6.0/src/google/protobuf/wire_format_lite_inl.h:383: warning: comparison between signed and unsigned integer expressions
protobuf-2.6.0/src/google/protobuf/wire_format_lite_inl.h:393: warning: comparison between signed and unsigned integer expressions
protobuf-2.6.0/src/google/protobuf/wire_format_lite_inl.h: In static member function ‘static bool google::protobuf::internal::WireFormatLite::ReadPackedFixedSizePrimitive(google::protobuf::io::CodedInputStream*, google::protobuf::RepeatedField<T>*) [with CType = double, google::protobuf::internal::WireFormatLite::FieldType DeclaredType = TYPE_DOUBLE]’:
protobuf-2.6.0/src/google/protobuf/wire_format_lite_inl.h:418:   instantiated from here
protobuf-2.6.0/src/google/protobuf/wire_format_lite_inl.h:383: warning: comparison between signed and unsigned integer expressions
protobuf-2.6.0/src/google/protobuf/wire_format_lite_inl.h:393: warning: comparison between signed and unsigned integer expressions
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c POPINDICES.cpp -o POPINDICES.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c R_API.cpp -o R_API.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c R_GatingHierarchy.cpp -o R_GatingHierarchy.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c R_GatingSet.cpp -o R_GatingSet.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c RcppExports.cpp -o RcppExports.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c calibrationTable.cpp -o calibrationTable.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c delimitedMessage.cpp -o delimitedMessage.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c flowData.cpp -o flowData.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c flowJoWorkspace.cpp -o flowJoWorkspace.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c gate.cpp -o gate.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c global.cpp -o global.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c macFlowJoWorkspace.cpp -o macFlowJoWorkspace.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c nodeProperties.cpp -o nodeProperties.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c spline.cpp -o spline.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c transformation.cpp -o transformation.o
include/transformation.hpp: In constructor ‘fasinhTrans::fasinhTrans()’:
include/transformation.hpp:245: warning: ‘fasinhTrans::length’ will be initialized after
include/transformation.hpp:244: warning:   ‘double fasinhTrans::maxRange’
transformation.cpp:269: warning:   when initialized here
include/transformation.hpp: In constructor ‘fasinhTrans::fasinhTrans(double, double, double, double, double)’:
include/transformation.hpp:245: warning: ‘fasinhTrans::length’ will be initialized after
include/transformation.hpp:244: warning:   ‘double fasinhTrans::maxRange’
transformation.cpp:273: warning:   when initialized here
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c winFlowJoWorkspace.cpp -o winFlowJoWorkspace.o
winFlowJoWorkspace.cpp:494:27: warning: "/*" within comment
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c workspace.cpp -o workspace.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c wsNode.cpp -o wsNode.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_serialization/archive_exception.cpp -o boost_serialization/archive_exception.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_serialization/basic_archive.cpp -o boost_serialization/basic_archive.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_serialization/basic_iarchive.cpp -o boost_serialization/basic_iarchive.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_serialization/basic_iserializer.cpp -o boost_serialization/basic_iserializer.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_serialization/basic_oarchive.cpp -o boost_serialization/basic_oarchive.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_serialization/basic_oserializer.cpp -o boost_serialization/basic_oserializer.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_serialization/basic_pointer_iserializer.cpp -o boost_serialization/basic_pointer_iserializer.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_serialization/basic_pointer_oserializer.cpp -o boost_serialization/basic_pointer_oserializer.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_serialization/basic_serializer_map.cpp -o boost_serialization/basic_serializer_map.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_serialization/basic_text_iprimitive.cpp -o boost_serialization/basic_text_iprimitive.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_serialization/basic_text_oprimitive.cpp -o boost_serialization/basic_text_oprimitive.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_serialization/basic_text_wiprimitive.cpp -o boost_serialization/basic_text_wiprimitive.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_serialization/basic_text_woprimitive.cpp -o boost_serialization/basic_text_woprimitive.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_serialization/basic_xml_archive.cpp -o boost_serialization/basic_xml_archive.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_serialization/binary_iarchive.cpp -o boost_serialization/binary_iarchive.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_serialization/binary_oarchive.cpp -o boost_serialization/binary_oarchive.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_serialization/binary_wiarchive.cpp -o boost_serialization/binary_wiarchive.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_serialization/binary_woarchive.cpp -o boost_serialization/binary_woarchive.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_serialization/codecvt_null.cpp -o boost_serialization/codecvt_null.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_serialization/extended_type_info.cpp -o boost_serialization/extended_type_info.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_serialization/extended_type_info_no_rtti.cpp -o boost_serialization/extended_type_info_no_rtti.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_serialization/extended_type_info_typeid.cpp -o boost_serialization/extended_type_info_typeid.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_serialization/polymorphic_iarchive.cpp -o boost_serialization/polymorphic_iarchive.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_serialization/polymorphic_oarchive.cpp -o boost_serialization/polymorphic_oarchive.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_serialization/stl_port.cpp -o boost_serialization/stl_port.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_serialization/text_iarchive.cpp -o boost_serialization/text_iarchive.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_serialization/text_oarchive.cpp -o boost_serialization/text_oarchive.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_serialization/text_wiarchive.cpp -o boost_serialization/text_wiarchive.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_serialization/text_woarchive.cpp -o boost_serialization/text_woarchive.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_serialization/utf8_codecvt_facet.cpp -o boost_serialization/utf8_codecvt_facet.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_serialization/void_cast.cpp -o boost_serialization/void_cast.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_serialization/xml_archive_exception.cpp -o boost_serialization/xml_archive_exception.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_serialization/xml_grammar.cpp -o boost_serialization/xml_grammar.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_serialization/xml_iarchive.cpp -o boost_serialization/xml_iarchive.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_serialization/xml_oarchive.cpp -o boost_serialization/xml_oarchive.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_serialization/xml_wgrammar.cpp -o boost_serialization/xml_wgrammar.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_serialization/xml_wiarchive.cpp -o boost_serialization/xml_wiarchive.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_serialization/xml_woarchive.cpp -o boost_serialization/xml_woarchive.o
ar rs libboost_serialization.a boost_serialization/archive_exception.o boost_serialization/basic_archive.o boost_serialization/basic_iarchive.o boost_serialization/basic_iserializer.o boost_serialization/basic_oarchive.o boost_serialization/basic_oserializer.o boost_serialization/basic_pointer_iserializer.o boost_serialization/basic_pointer_oserializer.o boost_serialization/basic_serializer_map.o boost_serialization/basic_text_iprimitive.o boost_serialization/basic_text_oprimitive.o boost_serialization/basic_text_wiprimitive.o boost_serialization/basic_text_woprimitive.o boost_serialization/basic_xml_archive.o boost_serialization/binary_iarchive.o boost_serialization/binary_oarchive.o boost_serialization/binary_wiarchive.o boost_serialization/binary_woarchive.o boost_serialization/codecvt_null.o boost_serialization/extended_type_info.o boost_serialization/extended_type_info_no_rtti.o boost_serialization/extended_type_info_typeid.o boost_serialization/polymorphic_iarchive.o boost_serialization/polymorphic_oarchive.o boost_serialization/stl_port.o boost_serialization/text_iarchive.o boost_serialization/text_oarchive.o boost_serialization/text_wiarchive.o boost_serialization/text_woarchive.o boost_serialization/utf8_codecvt_facet.o boost_serialization/void_cast.o boost_serialization/xml_archive_exception.o boost_serialization/xml_grammar.o boost_serialization/xml_iarchive.o boost_serialization/xml_oarchive.o boost_serialization/xml_wgrammar.o boost_serialization/xml_wiarchive.o boost_serialization/xml_woarchive.o
ar: creating archive libboost_serialization.a
/usr/bin/ranlib: file: libboost_serialization.a(stl_port.o) has no symbols
ar rs libprotobuf.a pb_build/src/google/protobuf/.libs/*.o pb_build/src/google/protobuf/stubs/.libs/*.o pb_build/src/google/protobuf/io/.libs/*.o
ar: creating archive libprotobuf.a
/usr/bin/ranlib: file: libprotobuf.a(atomicops_internals_x86_gcc.o) has no symbols
/usr/bin/ranlib: file: libprotobuf.a(atomicops_internals_x86_msvc.o) has no symbols
llvm-g++-4.2 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -L/usr/local/lib -o flowWorkspace.so GatingHierarchy.o GatingSet.o GatingSet.pb.o POPINDICES.o R_API.o R_GatingHierarchy.o R_GatingSet.o RcppExports.o calibrationTable.o delimitedMessage.o flowData.o flowJoWorkspace.o gate.o global.o macFlowJoWorkspace.o nodeProperties.o spline.o transformation.o winFlowJoWorkspace.o workspace.o wsNode.o libboost_serialization.a libprotobuf.a /Library/Frameworks/R.framework/Versions/3.2/Resources/library/flowCore/lib/libboost_regex.a -lxml2 -lz -lpthread -licucore -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.2-bioc/meat/flowWorkspace.buildbin-libdir/flowWorkspace/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (flowWorkspace)


>>>>>>> 
>>>>>>> FIXING LINKS FOR flowWorkspace.buildbin-libdir/flowWorkspace/libs//flowWorkspace.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgcc_s.1.dylib" "flowWorkspace.buildbin-libdir/flowWorkspace/libs//flowWorkspace.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgfortran.2.dylib" "flowWorkspace.buildbin-libdir/flowWorkspace/libs//flowWorkspace.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.5.2.dylib" "flowWorkspace.buildbin-libdir/flowWorkspace/libs//flowWorkspace.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.dylib" "flowWorkspace.buildbin-libdir/flowWorkspace/libs//flowWorkspace.so"
BioC 3.2: BUILD BIN report for flowWorkspace on perceval

Summary

Command output
