BioC 3.2: CHECK report for erccdashboard on moscato1

Package: erccdashboard

Version: 1.3.2

Command: rm -rf erccdashboard.buildbin-libdir erccdashboard.Rcheck && mkdir erccdashboard.buildbin-libdir erccdashboard.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=erccdashboard.buildbin-libdir erccdashboard_1.3.2.tar.gz >erccdashboard.Rcheck\00install.out 2>&1 && cp erccdashboard.Rcheck\00install.out erccdashboard-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=erccdashboard.buildbin-libdir --install="check:erccdashboard-install.out" --force-multiarch --no-vignettes --timings erccdashboard_1.3.2.tar.gz

StartedAt: 2015-08-20 04:09:08 -0700 (Thu, 20 Aug 2015)

EndedAt: 2015-08-20 04:12:22 -0700 (Thu, 20 Aug 2015)

EllapsedTime: 193.4 seconds

RetCode: 0

Status:  OK

CheckDir: erccdashboard.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf erccdashboard.buildbin-libdir erccdashboard.Rcheck && mkdir erccdashboard.buildbin-libdir erccdashboard.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=erccdashboard.buildbin-libdir erccdashboard_1.3.2.tar.gz >erccdashboard.Rcheck\00install.out 2>&1 && cp erccdashboard.Rcheck\00install.out erccdashboard-install.out  && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=erccdashboard.buildbin-libdir --install="check:erccdashboard-install.out" --force-multiarch --no-vignettes --timings erccdashboard_1.3.2.tar.gz
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* using log directory 'D:/biocbld/bbs-3.2-bioc/meat/erccdashboard.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'erccdashboard/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'erccdashboard' version '1.3.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'erccdashboard' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [27s] OK
Examples with CPU or elapsed time > 5s
         user system elapsed
estLODR 10.38   0.01   10.39
** running examples for arch 'x64' ... [30s] OK
Examples with CPU or elapsed time > 5s
         user system elapsed
estLODR 11.62      0   11.63
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'erccdashboard' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'erccdashboard' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'erccdashboard' as erccdashboard_1.3.2.zip
* DONE (erccdashboard)

name	user	system	elapsed
ERCC	0	0	0
SEQC.Example	0	0	0
annotLODR	3.01	0.00	3.03
dynRangePlot	2.15	0.00	2.15
erccROC	2.04	0.02	2.06
estLODR	10.38	0.01	10.39
est_r_m	0.89	0.00	0.89
geneExprTest	1.42	0.00	1.42
initDat	0.17	0.00	0.17
maSignal	3.55	0.02	3.57
runDashboard	0	0	0
saveERCCPlots	0	0	0

name	user	system	elapsed
ERCC	0	0	0
SEQC.Example	0	0	0
annotLODR	2.32	0.05	2.92
dynRangePlot	1.72	0.01	1.73
erccROC	2.74	0.02	2.76
estLODR	11.62	0.00	11.63
est_r_m	1.30	0.00	1.29
geneExprTest	1.32	0.01	1.34
initDat	0.19	0.00	0.19
maSignal	4.47	0.00	4.48
runDashboard	0	0	0
saveERCCPlots	0	0	0