eisa 1.21.0 Gabor Csardi
Snapshot Date: 2015-08-23 16:24:14 -0700 (Sun, 23 Aug 2015) | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/eisa | Last Changed Rev: 102594 / Revision: 107696 | Last Changed Date: 2015-04-16 13:02:44 -0700 (Thu, 16 Apr 2015) |
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | [ ERROR ] | skipped | | |
perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | ERROR | skipped | skipped | |
oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | ERROR | skipped | skipped | |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data eisa
###
##############################################################################
##############################################################################
* checking for file ‘eisa/DESCRIPTION’ ... OK
* preparing ‘eisa’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: MASS
Loading required package: grid
Loading required package: colorspace
Loading required package: lattice
Loading required package: isa2
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall,
clusterEvalQ, clusterExport, clusterMap,
parApply, parCapply, parLapply, parLapplyLB,
parRapply, parSapply, parSapplyLB
The following objects are masked from ‘package:stats’:
IQR, mad, xtabs
The following objects are masked from ‘package:base’:
Filter, Find, Map, Position, Reduce,
anyDuplicated, append, as.data.frame, as.vector,
cbind, colnames, do.call, duplicated, eval,
evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax,
pmax.int, pmin, pmin.int, rank, rbind, rep.int,
rownames, sapply, setdiff, sort, table, tapply,
union, unique, unlist, unsplit
Welcome to Bioconductor
Vignettes contain introductory material; view
with 'browseVignettes()'. To cite Bioconductor,
see 'citation("Biobase")', and for packages
'citation("pkgname")'.
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: IRanges
Loading required package: S4Vectors
Attaching package: ‘AnnotationDbi’
The following object is masked from ‘package:MASS’:
select
Loading required package: DBI
Loading required package: org.Hs.eg.db
KEGG.db contains mappings based on older data because
the original resource was removed from the the
public domain before the most recent update was
produced. This package should now be considered
deprecated and future versions of Bioconductor may
not have it available. Users who want more current
data are encouraged to look at the KEGGREST or
reactome.db packages
Attaching package: ‘igraph’
The following objects are masked from ‘package:IRanges’:
compare, simplify, union
The following objects are masked from ‘package:S4Vectors’:
compare, union
The following objects are masked from ‘package:BiocGenerics’:
normalize, union
The following objects are masked from ‘package:stats’:
decompose, spectrum
The following object is masked from ‘package:base’:
union
Error: processing vignette 'EISA_biclust.Rnw' failed with diagnostics:
chunk 16 (label = GOtreeplot-real)
Error in summary(GO$CC)[[3]] : subscript out of bounds
Execution halted