BioC 3.2: CHECK report for diggit on linux1.bioconductor.org

Package: diggit

Version: 1.2.0

Command: /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings diggit_1.2.0.tar.gz

StartedAt: 2015-10-27 02:58:07 -0400 (Tue, 27 Oct 2015)

EndedAt: 2015-10-27 03:00:37 -0400 (Tue, 27 Oct 2015)

EllapsedTime: 150.6 seconds

RetCode: 0

Status:  OK

CheckDir: diggit.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings diggit_1.2.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.2-bioc/meat/diggit.Rcheck’
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘diggit/DESCRIPTION’ ... OK
* this is package ‘diggit’ version ‘1.2.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘diggit’ can be installed ... [3s/3s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [220s/120s] OK
Examples with CPU or elapsed time > 5s
                       user system elapsed
marina-methods      145.439  3.681  48.991
diggit-plot          21.954  0.044  22.028
aqtl-methods         18.145  0.159  18.348
conditional-methods  17.043  0.068  17.133
diggit-methods        6.810  0.036   6.851
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.2-bioc/meat/diggit.Rcheck/00check.log’
for details.

* installing *source* package ‘diggit’ ...
** R
** inst
** preparing package for lazy loading
Creating a generic function for ‘print’ from package ‘base’ in package ‘diggit’
Creating a generic function for ‘summary’ from package ‘base’ in package ‘diggit’
Creating a generic function for ‘head’ from package ‘utils’ in package ‘diggit’
Creating a generic function for ‘plot’ from package ‘graphics’ in package ‘diggit’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (diggit)

name	user	system	elapsed
aqtl-methods	18.145	0.159	18.348
conditional-methods	17.043	0.068	17.133
correlation	0	0	0
diggit-class	1.579	0.012	1.591
diggit-methods	6.810	0.036	6.851
diggit-plot	21.954	0.044	22.028
fcnv-methods	1.683	0.020	1.704
marina-methods	145.439	3.681	48.991
mutualInfo	2.225	0.012	2.238