Back to the "Multiple platform build/check report" A  B  C [D] E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.2: INSTALL report for deepSNV on moscato1

This page was generated on 2015-08-20 13:20:40 -0700 (Thu, 20 Aug 2015).

Package 254/1069HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
deepSNV 1.15.3
Moritz Gerstung
Snapshot Date: 2015-08-19 16:24:33 -0700 (Wed, 19 Aug 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/deepSNV
Last Changed Rev: 104601 / Revision: 107602
Last Changed Date: 2015-06-05 11:15:02 -0700 (Fri, 05 Jun 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: deepSNV
Version: 1.15.3
Command: C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.2/bioc/src/contrib/deepSNV_1.15.3.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch deepSNV_1.15.3.tar.gz && rm deepSNV_1.15.3.tar.gz
StartedAt: 2015-08-19 18:30:10 -0700 (Wed, 19 Aug 2015)
EndedAt: 2015-08-19 18:32:07 -0700 (Wed, 19 Aug 2015)
EllapsedTime: 116.8 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.2/bioc/src/contrib/deepSNV_1.15.3.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch deepSNV_1.15.3.tar.gz && rm deepSNV_1.15.3.tar.gz
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1277k  100 1277k    0     0  43.4M      0 --:--:-- --:--:-- --:--:-- 54.2M

install for i386

* installing to library 'D:/biocbld/bbs-3.2-bioc/R/library'
* installing *source* package 'deepSNV' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.2-bioc/R/library/Rhtslib/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c bam2R.cpp -o bam2R.o
bam2R.cpp: In function 'int bam2R(char**, char**, int*, int*, int*, int*, int*, int*, int*, int*)':
bam2R.cpp:43:13: warning: unused variable 'iter' [-Wunused-variable]
bam2R.cpp:46:6: warning: unused variable 'c' [-Wunused-variable]
gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.2-bioc/R/library/Rhtslib/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c betabinom.c -o betabinom.o
betabinom.c: In function 'pbb':
betabinom.c:27:9: warning: unused variable 'log' [-Wunused-variable]
g++ -m32 -shared -s -static-libgcc -o deepSNV.dll tmp.def bam2R.o betabinom.o -LD:/biocbld/bbs-3.2-bioc/R/library/Rhtslib/lib/i386 -lhts -pthread -lws2_32 D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/libs/i386/libzbioc.a -Ld:/RCompile/r-compiling/local/local320/lib/i386 -Ld:/RCompile/r-compiling/local/local320/lib -LD:/biocbld/BBS-3˜1.2-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-3.2-bioc/R/library/deepSNV/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing to library 'D:/biocbld/bbs-3.2-bioc/R/library'
* installing *source* package 'deepSNV' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.2-bioc/R/library/Rhtslib/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c bam2R.cpp -o bam2R.o
bam2R.cpp: In function 'int bam2R(char**, char**, int*, int*, int*, int*, int*, int*, int*, int*)':
bam2R.cpp:43:13: warning: unused variable 'iter' [-Wunused-variable]
bam2R.cpp:46:6: warning: unused variable 'c' [-Wunused-variable]
gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.2-bioc/R/library/Rhtslib/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c betabinom.c -o betabinom.o
betabinom.c: In function 'pbb':
betabinom.c:27:9: warning: unused variable 'log' [-Wunused-variable]
g++ -m64 -shared -s -static-libgcc -o deepSNV.dll tmp.def bam2R.o betabinom.o -LD:/biocbld/bbs-3.2-bioc/R/library/Rhtslib/lib/x64 -lhts -pthread -lws2_32 D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/libs/x64/libzbioc.a -Ld:/RCompile/r-compiling/local/local320/lib/x64 -Ld:/RCompile/r-compiling/local/local320/lib -LD:/biocbld/BBS-3˜1.2-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-3.2-bioc/R/library/deepSNV/libs/x64
** testing if installed package can be loaded
* DONE (deepSNV)