BioC 3.2: CHECK report for cytofkit on windows1.bioconductor.org

Package: cytofkit

Version: 1.2.0

Command: rm -rf cytofkit.buildbin-libdir cytofkit.Rcheck && mkdir cytofkit.buildbin-libdir cytofkit.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=cytofkit.buildbin-libdir cytofkit_1.2.0.tar.gz >cytofkit.Rcheck\00install.out 2>&1 && cp cytofkit.Rcheck\00install.out cytofkit-install.out && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=cytofkit.buildbin-libdir --install="check:cytofkit-install.out" --force-multiarch --no-vignettes --timings cytofkit_1.2.0.tar.gz

StartedAt: 2015-10-27 01:03:20 -0400 (Tue, 27 Oct 2015)

EndedAt: 2015-10-27 01:08:23 -0400 (Tue, 27 Oct 2015)

EllapsedTime: 303.5 seconds

RetCode: 0

Status:  OK

CheckDir: cytofkit.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf cytofkit.buildbin-libdir cytofkit.Rcheck && mkdir cytofkit.buildbin-libdir cytofkit.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=cytofkit.buildbin-libdir cytofkit_1.2.0.tar.gz >cytofkit.Rcheck\00install.out 2>&1 && cp cytofkit.Rcheck\00install.out cytofkit-install.out  && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=cytofkit.buildbin-libdir --install="check:cytofkit-install.out" --force-multiarch --no-vignettes --timings cytofkit_1.2.0.tar.gz
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* using log directory 'C:/biocbld/bbs-3.2-bioc/meat/cytofkit.Rcheck'
* using R version 3.2.2 Patched (2015-08-16 r69094)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'cytofkit/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'cytofkit' version '1.2.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'cytofkit' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [96s] OK
Examples with CPU or elapsed time > 5s
                user system elapsed
densVM_cluster 90.74   0.43   91.25
** running examples for arch 'x64' ... [99s] OK
Examples with CPU or elapsed time > 5s
                user system elapsed
densVM_cluster 92.67   0.28   93.03
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R' [4s]
 [4s] OK
** running tests for arch 'x64' ...
  Running 'runTests.R' [5s]
 [5s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'cytofkit' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'cytofkit' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'cytofkit' as cytofkit_1.2.0.zip
* DONE (cytofkit)

name	user	system	elapsed
clust_mean_heatmap	0.05	0.00	0.04
clust_percentage_heatmap	0.15	0.00	0.16
clust_state	0	0	0
cluster_gridPlot	0.36	0.00	0.36
cluster_plot	0.25	0.00	0.25
cytof_dimReduction	0.86	0.00	0.86
cytof_tsne_densvm	0	0	0
cytof_tsne_densvm_GUI	0	0	0
cytof_write_results	0	0	0
cytofkit	0	0	0
densVM_cluster	90.74	0.43	91.25
fcs_lgcl	0.18	0.00	0.18
fcs_lgcl_merge	0.19	0.00	0.19
peaksGamma_plot	0.09	0.00	0.09

name	user	system	elapsed
clust_mean_heatmap	0.03	0.02	0.05
clust_percentage_heatmap	0.03	0.00	0.03
clust_state	0	0	0
cluster_gridPlot	0.39	0.02	0.40
cluster_plot	0.29	0.00	0.30
cytof_dimReduction	0.91	0.00	0.95
cytof_tsne_densvm	0	0	0
cytof_tsne_densvm_GUI	0	0	0
cytof_write_results	0	0	0
cytofkit	0.00	0.01	0.02
densVM_cluster	92.67	0.28	93.03
fcs_lgcl	0.2	0.0	0.2
fcs_lgcl_merge	0.19	0.02	0.20
peaksGamma_plot	0.11	0.00	0.11