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BioC 3.2: CHECK report for XVector on moscato1

This page was generated on 2015-08-20 13:21:38 -0700 (Thu, 20 Aug 2015).

Package 1067/1069HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
XVector 0.9.2
H. Pages
Snapshot Date: 2015-08-19 16:24:33 -0700 (Wed, 19 Aug 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/XVector
Last Changed Rev: 107602 / Revision: 107602
Last Changed Date: 2015-08-19 16:18:45 -0700 (Wed, 19 Aug 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  WARNINGS YES, new version is higher than in internal repository
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK [ WARNINGS ] OK YES, new version is higher than in internal repository
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  WARNINGS  OK YES, new version is higher than in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  WARNINGS  OK YES, new version is higher than in internal repository

Summary

Package: XVector
Version: 0.9.2
Command: rm -rf XVector.buildbin-libdir XVector.Rcheck && mkdir XVector.buildbin-libdir XVector.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=XVector.buildbin-libdir XVector_0.9.2.tar.gz >XVector.Rcheck\00install.out 2>&1 && cp XVector.Rcheck\00install.out XVector-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=XVector.buildbin-libdir --install="check:XVector-install.out" --force-multiarch --no-vignettes --timings XVector_0.9.2.tar.gz
StartedAt: 2015-08-20 11:35:36 -0700 (Thu, 20 Aug 2015)
EndedAt: 2015-08-20 11:38:14 -0700 (Thu, 20 Aug 2015)
EllapsedTime: 158.0 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: XVector.Rcheck
Warnings: 2

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf XVector.buildbin-libdir XVector.Rcheck && mkdir XVector.buildbin-libdir XVector.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=XVector.buildbin-libdir XVector_0.9.2.tar.gz >XVector.Rcheck\00install.out 2>&1 && cp XVector.Rcheck\00install.out XVector-install.out  && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=XVector.buildbin-libdir --install="check:XVector-install.out" --force-multiarch --no-vignettes --timings XVector_0.9.2.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.2-bioc/meat/XVector.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'XVector/DESCRIPTION' ... OK
* this is package 'XVector' version '0.9.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'XVector' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Packages listed in more than one of Depends, Imports, Suggests, Enhances:
  'methods' 'BiocGenerics' 'S4Vectors' 'IRanges'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Unexported objects imported by ':::' calls:
  'BiocGenerics:::testPackage' 'IRanges:::solveUserSEWForSingleSeq'
  'S4Vectors:::disableValidity' 'S4Vectors:::rbind_mcols'
  'S4Vectors:::setDefaultSlotValue' 'S4Vectors:::toNumSnippet'
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
==,XDoubleViews-numeric: no visible global function definition for
  'anyMissing'
==,XIntegerViews-integer: no visible global function definition for
  'anyMissing'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  'RdaCollection' 'rdaPath'
Undocumented S4 classes:
  'RdaCollection'
Undocumented S4 methods:
  generic '[[' and siglist 'RdaCollection'
  generic 'coerce' and siglist 'XVector,Rle'
  generic 'extractList' and siglist 'XVector,Ranges'
  generic 'length' and siglist 'RdaCollection'
  generic 'names' and siglist 'RdaCollection'
  generic 'rdaPath' and siglist 'RdaCollection'
  generic 'relist' and siglist 'XVector,PartitioningByEnd'
  generic 'relistToClass' and siglist 'XVector'
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... WARNING
Found the following file(s) containing GNU extensions:
  src/Makevars
Portable Makefiles do not use GNU extensions such as +=, :=, $(shell),
$(wildcard), ifeq ... endif. See section 'Writing portable packages' in
the 'Writing R Extensions' manual.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... NOTE
Note: information on .o files for i386 is not available
Note: information on .o files for x64 is not available
File 'D:/biocbld/bbs-3.2-bioc/meat/XVector.buildbin-libdir/XVector/libs/i386/XVector.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
File 'D:/biocbld/bbs-3.2-bioc/meat/XVector.buildbin-libdir/XVector/libs/x64/XVector.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor the system RNG.
The detected symbols are linked into the code but might come from
libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking examples ...
** running examples for arch 'i386' ... [9s] OK
Examples with CPU or elapsed time > 5s
                user system elapsed
reverse-methods 4.41   0.08    5.03
** running examples for arch 'x64' ... [9s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'run_unitTests.R' [3s]
 [4s] OK
** running tests for arch 'x64' ...
  Running 'run_unitTests.R' [5s]
 [5s] OK
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs, 4 NOTEs
See
  'D:/biocbld/bbs-3.2-bioc/meat/XVector.Rcheck/00check.log'
for details.

XVector.Rcheck/00install.out:


install for i386

* installing *source* package 'XVector' ...
** libs
gcc -m32 -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.2-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/IRanges/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c IRanges_stubs.c -o IRanges_stubs.o
gcc -m32 -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.2-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/IRanges/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c Ocopy_byteblocks.c -o Ocopy_byteblocks.o
gcc -m32 -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.2-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/IRanges/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c R_init_XVector.c -o R_init_XVector.o
gcc -m32 -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.2-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/IRanges/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc -m32 -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.2-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/IRanges/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c SharedDouble_class.c -o SharedDouble_class.o
gcc -m32 -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.2-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/IRanges/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c SharedInteger_class.c -o SharedInteger_class.o
gcc -m32 -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.2-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/IRanges/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c SharedRaw_class.c -o SharedRaw_class.o
SharedRaw_class.c: In function 'SharedRaw_read_complexes_from_subscript':
SharedRaw_class.c:364:13: warning: variable 'src_tag' set but not used [-Wunused-but-set-variable]
gcc -m32 -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.2-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/IRanges/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c SharedVector_class.c -o SharedVector_class.o
gcc -m32 -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.2-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/IRanges/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c XRawList_comparison.c -o XRawList_comparison.o
gcc -m32 -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.2-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/IRanges/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c XVectorList_class.c -o XVectorList_class.o
XVectorList_class.c: In function '_new_XRawList_from_CharAEAE':
XVectorList_class.c:466:33: warning: 'lkup_length' may be used uninitialized in this function [-Wuninitialized]
gcc -m32 -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.2-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/IRanges/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c XVector_class.c -o XVector_class.o
gcc -m32 -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.2-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/IRanges/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c io_utils.c -o io_utils.o
gcc -m32 -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.2-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/IRanges/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c slice_methods.c -o slice_methods.o
gcc -m32 -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.2-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/IRanges/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c vector_copy.c -o vector_copy.o
gcc -m32 -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.2-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/IRanges/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c view_summarization_methods.c -o view_summarization_methods.o
view_summarization_methods.c: In function 'get_which_min_from_Ints_holder':
view_summarization_methods.c:219:36: warning: 'cur_min' may be used uninitialized in this function [-Wuninitialized]
view_summarization_methods.c: In function 'get_which_min_from_Doubles_holder':
view_summarization_methods.c:246:36: warning: 'cur_min' may be used uninitialized in this function [-Wuninitialized]
view_summarization_methods.c: In function 'get_which_max_from_Ints_holder':
view_summarization_methods.c:269:36: warning: 'cur_max' may be used uninitialized in this function [-Wuninitialized]
view_summarization_methods.c: In function 'get_which_max_from_Doubles_holder':
view_summarization_methods.c:296:36: warning: 'cur_max' may be used uninitialized in this function [-Wuninitialized]
gcc -m32 -shared -s -static-libgcc -o XVector.dll tmp.def IRanges_stubs.o Ocopy_byteblocks.o R_init_XVector.o S4Vectors_stubs.o SharedDouble_class.o SharedInteger_class.o SharedRaw_class.o SharedVector_class.o XRawList_comparison.o XVectorList_class.o XVector_class.o io_utils.o slice_methods.o vector_copy.o view_summarization_methods.o -LD:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/libs/i386 -lzlib1bioc -Ld:/RCompile/r-compiling/local/local320/lib/i386 -Ld:/RCompile/r-compiling/local/local320/lib -LD:/biocbld/BBS-3˜1.2-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-3.2-bioc/meat/XVector.buildbin-libdir/XVector/libs/i386
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'toString' from package 'base' in package 'XVector'
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'XVector' ...
** libs
gcc -m64 -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.2-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/IRanges/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c IRanges_stubs.c -o IRanges_stubs.o
gcc -m64 -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.2-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/IRanges/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c Ocopy_byteblocks.c -o Ocopy_byteblocks.o
gcc -m64 -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.2-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/IRanges/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c R_init_XVector.c -o R_init_XVector.o
gcc -m64 -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.2-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/IRanges/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc -m64 -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.2-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/IRanges/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c SharedDouble_class.c -o SharedDouble_class.o
gcc -m64 -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.2-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/IRanges/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c SharedInteger_class.c -o SharedInteger_class.o
gcc -m64 -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.2-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/IRanges/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c SharedRaw_class.c -o SharedRaw_class.o
SharedRaw_class.c: In function 'SharedRaw_read_complexes_from_subscript':
SharedRaw_class.c:364:13: warning: variable 'src_tag' set but not used [-Wunused-but-set-variable]
gcc -m64 -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.2-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/IRanges/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c SharedVector_class.c -o SharedVector_class.o
gcc -m64 -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.2-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/IRanges/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c XRawList_comparison.c -o XRawList_comparison.o
gcc -m64 -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.2-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/IRanges/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c XVectorList_class.c -o XVectorList_class.o
XVectorList_class.c: In function '_new_XRawList_from_CharAEAE':
XVectorList_class.c:466:33: warning: 'lkup_length' may be used uninitialized in this function [-Wuninitialized]
gcc -m64 -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.2-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/IRanges/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c XVector_class.c -o XVector_class.o
gcc -m64 -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.2-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/IRanges/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c io_utils.c -o io_utils.o
gcc -m64 -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.2-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/IRanges/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c slice_methods.c -o slice_methods.o
gcc -m64 -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.2-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/IRanges/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c vector_copy.c -o vector_copy.o
gcc -m64 -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.2-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/IRanges/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c view_summarization_methods.c -o view_summarization_methods.o
view_summarization_methods.c: In function 'get_which_min_from_Ints_holder':
view_summarization_methods.c:219:36: warning: 'cur_min' may be used uninitialized in this function [-Wuninitialized]
view_summarization_methods.c: In function 'get_which_min_from_Doubles_holder':
view_summarization_methods.c:246:36: warning: 'cur_min' may be used uninitialized in this function [-Wuninitialized]
view_summarization_methods.c: In function 'get_which_max_from_Ints_holder':
view_summarization_methods.c:269:36: warning: 'cur_max' may be used uninitialized in this function [-Wuninitialized]
view_summarization_methods.c: In function 'get_which_max_from_Doubles_holder':
view_summarization_methods.c:296:36: warning: 'cur_max' may be used uninitialized in this function [-Wuninitialized]
gcc -m64 -shared -s -static-libgcc -o XVector.dll tmp.def IRanges_stubs.o Ocopy_byteblocks.o R_init_XVector.o S4Vectors_stubs.o SharedDouble_class.o SharedInteger_class.o SharedRaw_class.o SharedVector_class.o XRawList_comparison.o XVectorList_class.o XVector_class.o io_utils.o slice_methods.o vector_copy.o view_summarization_methods.o -LD:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -Ld:/RCompile/r-compiling/local/local320/lib/x64 -Ld:/RCompile/r-compiling/local/local320/lib -LD:/biocbld/BBS-3˜1.2-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-3.2-bioc/meat/XVector.buildbin-libdir/XVector/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'XVector' as XVector_0.9.2.zip
* DONE (XVector)

XVector.Rcheck/examples_i386/XVector-Ex.timings:

nameusersystemelapsed
XDoubleViews-class0.220.010.23
XIntegerViews-class0.370.020.39
XRawList-comparison000
XVector-class0.050.000.05
compact-methods0.550.030.59
intra-range-methods000
reverse-methods4.410.085.03
slice-methods0.010.000.02
view-summarization-methods0.030.000.03

XVector.Rcheck/examples_x64/XVector-Ex.timings:

nameusersystemelapsed
XDoubleViews-class0.210.010.24
XIntegerViews-class0.390.020.40
XRawList-comparison000
XVector-class0.080.000.08
compact-methods0.380.000.39
intra-range-methods000
reverse-methods4.460.044.51
slice-methods0.040.000.04
view-summarization-methods0.040.000.04