XDE 2.15.0
Robert Scharpf
| Snapshot Date: 2015-08-19 16:24:33 -0700 (Wed, 19 Aug 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/XDE | | Last Changed Rev: 102594 / Revision: 107602 | | Last Changed Date: 2015-04-16 13:02:44 -0700 (Thu, 16 Apr 2015) |
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | OK | [ OK ] | |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | OK | OK | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK | |
##############################################################################
##############################################################################
###
### Running command:
###
### cd XDE.buildbin-libdir/XDE && zip -r ../../XDE_2.15.0.zip . & cd ../..
###
##############################################################################
##############################################################################
adding: CITATION (188 bytes security) (deflated 37%)
adding: data/ (256 bytes security) (stored 0%)
adding: data/expressionSetList.RData (188 bytes security) (deflated 0%)
adding: data/xmcmc.RData (188 bytes security) (deflated 0%)
adding: DESCRIPTION (188 bytes security) (deflated 46%)
adding: doc/ (256 bytes security) (stored 0%)
adding: doc/index.html (188 bytes security) (deflated 67%)
adding: doc/XDE.pdf (188 bytes security) (deflated 13%)
adding: doc/XDE.R (188 bytes security) (deflated 80%)
adding: doc/XDE.Rnw (188 bytes security) (deflated 65%)
adding: doc/XdeParameterClass.pdf (188 bytes security) (deflated 9%)
adding: doc/XdeParameterClass.R (188 bytes security) (deflated 82%)
adding: doc/XdeParameterClass.Rnw (188 bytes security) (deflated 67%)
adding: help/ (256 bytes security) (stored 0%)
adding: help/aliases.rds (188 bytes security) (stored 0%)
adding: help/AnIndex (188 bytes security) (deflated 84%)
adding: help/paths.rds (188 bytes security) (stored 0%)
adding: help/XDE.rdb (188 bytes security) (deflated 2%)
adding: help/XDE.rdx (188 bytes security) (stored 0%)
adding: html/ (256 bytes security) (stored 0%)
adding: html/00Index.html (188 bytes security) (deflated 89%)
adding: html/R.css (188 bytes security) (deflated 75%)
adding: INDEX (188 bytes security) (deflated 67%)
adding: libs/ (256 bytes security) (stored 0%)
adding: libs/i386/ (256 bytes security) (stored 0%)
adding: libs/i386/XDE.dll (188 bytes security) (deflated 63%)
adding: libs/x64/ (256 bytes security) (stored 0%)
adding: libs/x64/XDE.dll (188 bytes security) (deflated 67%)
adding: logFiles/ (256 bytes security) (stored 0%)
adding: logFiles/a.log (188 bytes security) (deflated 71%)
adding: logFiles/b.log (188 bytes security) (deflated 59%)
adding: logFiles/BES.rda (188 bytes security) (stored 0%)
adding: logFiles/c2.log (188 bytes security) (deflated 65%)
adding: logFiles/gamma2.log (188 bytes security) (deflated 65%)
adding: logFiles/l.log (188 bytes security) (deflated 64%)
adding: logFiles/lambda.log (188 bytes security) (deflated 82%)
adding: logFiles/postAvg.rda (188 bytes security) (stored 0%)
adding: logFiles/r.log (188 bytes security) (deflated 66%)
adding: logFiles/rho.log (188 bytes security) (deflated 67%)
adding: logFiles/t.log (188 bytes security) (deflated 64%)
adding: logFiles/tau2R.log (188 bytes security) (deflated 67%)
adding: logFiles/tau2Rho.log (188 bytes security) (deflated 61%)
adding: logFiles/theta.log (188 bytes security) (deflated 63%)
adding: logFiles/xi.log (188 bytes security) (deflated 77%)
adding: MD5 (188 bytes security) (deflated 51%)
adding: Meta/ (256 bytes security) (stored 0%)
adding: Meta/data.rds (188 bytes security) (stored 0%)
adding: Meta/hsearch.rds (188 bytes security) (stored 0%)
adding: Meta/links.rds (188 bytes security) (stored 0%)
adding: Meta/nsInfo.rds (188 bytes security) (stored 0%)
adding: Meta/package.rds (188 bytes security) (stored 0%)
adding: Meta/Rd.rds (188 bytes security) (stored 0%)
adding: Meta/vignette.rds (188 bytes security) (stored 0%)
adding: NAMESPACE (188 bytes security) (deflated 73%)
adding: NEWS (188 bytes security) (deflated 74%)
adding: R/ (256 bytes security) (stored 0%)
adding: R/XDE (188 bytes security) (deflated 41%)
adding: R/XDE.rdb (188 bytes security) (deflated 35%)
adding: R/XDE.rdx (188 bytes security) (deflated 4%)
adding: scripts/ (256 bytes security) (stored 0%)
adding: scripts/ModelA_B.R (188 bytes security) (deflated 70%)
adding: scripts/ModelC_D.R (188 bytes security) (deflated 79%)
adding: scripts/ModelI_II.R (188 bytes security) (deflated 80%)
adding: scripts/v2Interface.R (188 bytes security) (deflated 78%)
adding: Test/ (256 bytes security) (stored 0%)
adding: Test/DESCRIPTION (188 bytes security) (deflated 28%)
adding: Test/man/ (256 bytes security) (stored 0%)
adding: Test/man/Test-package.Rd (188 bytes security) (deflated 48%)
adding: Test/NAMESPACE (188 bytes security) (stored 0%)
adding: Test/R/ (256 bytes security) (stored 0%)
adding: Test/R/initializeParams.R (188 bytes security) (deflated 67%)
adding: Test/R/zzz.R (188 bytes security) (deflated 12%)
adding: Test/src/ (256 bytes security) (stored 0%)
adding: Test/src/Cholesky.cpp (188 bytes security) (deflated 63%)
adding: Test/src/Cholesky.h (188 bytes security) (deflated 55%)
adding: Test/src/diffExpressed_main.cpp (188 bytes security) (deflated 73%)
adding: Test/src/mainTestHyper_v2.cpp (188 bytes security) (deflated 80%)
adding: Test/src/Matrix.h (188 bytes security) (deflated 65%)
adding: Test/src/Matrix_v2.cpp (188 bytes security) (deflated 82%)
adding: Test/src/Matrix_v2.h (188 bytes security) (deflated 74%)
adding: Test/src/Potential.h (188 bytes security) (deflated 49%)
adding: Test/src/PotentialA.h (188 bytes security) (deflated 59%)
adding: Test/src/PotentialB.h (188 bytes security) (deflated 59%)
adding: Test/src/PotentialDDelta.h (188 bytes security) (deflated 66%)
adding: Test/src/PotentialDDeltag.h (188 bytes security) (deflated 65%)
adding: Test/src/PotentialDelta.h (188 bytes security) (deflated 64%)
adding: Test/src/PotentialDeltag.h (188 bytes security) (deflated 62%)
adding: Test/src/PotentialFunction.h (188 bytes security) (deflated 84%)
adding: Test/src/PotentialNu.h (188 bytes security) (deflated 66%)
adding: Test/src/PotentialNug.h (188 bytes security) (deflated 66%)
adding: Test/src/PotentialPhi.h (188 bytes security) (deflated 61%)
adding: Test/src/PotentialPhiqg.h (188 bytes security) (deflated 60%)
adding: Test/src/PotentialR.h (188 bytes security) (deflated 58%)
adding: Test/src/PotentialRho.h (188 bytes security) (deflated 59%)
adding: Test/src/PotentialSigma2.h (188 bytes security) (deflated 62%)
adding: Test/src/PotentialSigma2qg.h (188 bytes security) (deflated 61%)
adding: Test/src/PotentialSum.h (188 bytes security) (deflated 63%)
adding: Test/src/PotentialTau2.h (188 bytes security) (deflated 59%)
adding: Test/src/PotentialX.h (188 bytes security) (deflated 60%)
adding: Test/src/PotentialXi.h (188 bytes security) (deflated 61%)
adding: Test/src/PotentialXqg.h (188 bytes security) (deflated 67%)
adding: Test/src/PotentialZero.h (188 bytes security) (deflated 59%)
adding: Test/src/Potential_v2.cpp (188 bytes security) (deflated 82%)
adding: Test/src/Potential_v2.h (188 bytes security) (deflated 84%)
adding: Test/src/Random.h (188 bytes security) (deflated 77%)
adding: Test/src/Random_v2.cpp (188 bytes security) (deflated 82%)
adding: Test/src/Random_v2.h (188 bytes security) (deflated 83%)
adding: Test/src/Report.h (188 bytes security) (deflated 47%)
adding: Test/src/ReportA.h (188 bytes security) (deflated 59%)
adding: Test/src/ReportAcceptance.h (188 bytes security) (deflated 69%)
adding: Test/src/ReportB.h (188 bytes security) (deflated 59%)
adding: Test/src/ReportC2.h (188 bytes security) (deflated 59%)
adding: Test/src/ReportDDelta.h (188 bytes security) (deflated 62%)
adding: Test/src/ReportDelta.h (188 bytes security) (deflated 62%)
adding: Test/src/ReportDiffexpressed.h (188 bytes security) (deflated 67%)
adding: Test/src/ReportGamma2.h (188 bytes security) (deflated 60%)
adding: Test/src/ReportL.h (188 bytes security) (deflated 59%)
adding: Test/src/ReportLambda.h (188 bytes security) (deflated 61%)
adding: Test/src/ReportNu.h (188 bytes security) (deflated 61%)
adding: Test/src/ReportPhi.h (188 bytes security) (deflated 62%)
adding: Test/src/ReportPotential.h (188 bytes security) (deflated 68%)
adding: Test/src/ReportProbDelta.h (188 bytes security) (deflated 71%)
adding: Test/src/ReportR.h (188 bytes security) (deflated 61%)
adding: Test/src/ReportRho.h (188 bytes security) (deflated 62%)
adding: Test/src/ReportSigma2.h (188 bytes security) (deflated 62%)
adding: Test/src/ReportT.h (188 bytes security) (deflated 59%)
adding: Test/src/ReportTau2R.h (188 bytes security) (deflated 61%)
adding: Test/src/ReportTau2Rho.h (188 bytes security) (deflated 62%)
adding: Test/src/ReportTheta.h (188 bytes security) (deflated 61%)
adding: Test/src/ReportXi.h (188 bytes security) (deflated 60%)
adding: Test/src/Rinterface_v2.cpp (188 bytes security) (deflated 91%)
adding: Test/src/Structure.cpp (188 bytes security) (deflated 86%)
adding: Test/src/Structure.h (188 bytes security) (deflated 76%)
adding: Test/src/Update.h (188 bytes security) (deflated 56%)
adding: Test/src/UpdateAMH.h (188 bytes security) (deflated 74%)
adding: Test/src/UpdateBMH.h (188 bytes security) (deflated 74%)
adding: Test/src/UpdateC2Gibbs.h (188 bytes security) (deflated 76%)
adding: Test/src/UpdateDeltaMH.h (188 bytes security) (deflated 78%)
adding: Test/src/UpdateGamma2Gibbs.h (188 bytes security) (deflated 62%)
adding: Test/src/UpdateLambdaMH.h (188 bytes security) (deflated 62%)
adding: Test/src/UpdateLMH.h (188 bytes security) (deflated 63%)
adding: Test/src/UpdateMultiplicativePositive.h (188 bytes security) (deflated 84%)
adding: Test/src/UpdatePhiMH.h (188 bytes security) (deflated 62%)
adding: Test/src/UpdateRC2MH.h (188 bytes security) (deflated 73%)
adding: Test/src/UpdateRhoGamma2MH.h (188 bytes security) (deflated 74%)
adding: Test/src/UpdateRhoMH.h (188 bytes security) (deflated 70%)
adding: Test/src/UpdateRMH.h (188 bytes security) (deflated 70%)
adding: Test/src/UpdateSigma2MH.h (188 bytes security) (deflated 64%)
adding: Test/src/UpdateTau2RDDeltaMH.h (188 bytes security) (deflated 76%)
adding: Test/src/UpdateTau2RhoMH.h (188 bytes security) (deflated 67%)
adding: Test/src/UpdateTau2RhoNuMH.h (188 bytes security) (deflated 75%)
adding: Test/src/UpdateTau2RMH.h (188 bytes security) (deflated 67%)
adding: Test/src/UpdateThetaMH.h (188 bytes security) (deflated 62%)
adding: Test/src/UpdateTMH.h (188 bytes security) (deflated 61%)
adding: Test/src/UpdateXiGibbs.h (188 bytes security) (deflated 71%)
adding: Test/src/Update_v2.cpp (188 bytes security) (deflated 89%)
adding: Test/src/Update_v2.h (188 bytes security) (deflated 89%)
adding: Test/src/Utility_v2.cpp (188 bytes security) (deflated 83%)
adding: Test/src/Utility_v2.h (188 bytes security) (deflated 82%)
adding: Test/vignettes/ (256 bytes security) (stored 0%)
adding: Test/vignettes/callC.R (188 bytes security) (deflated 55%)
adding: unitTests/ (256 bytes security) (stored 0%)
adding: unitTests/Makefile (188 bytes security) (deflated 23%)
adding: unitTests/report.html (188 bytes security) (deflated 61%)
adding: unitTests/report.txt (188 bytes security) (deflated 48%)
adding: unitTests/reportSummary.txt (188 bytes security) (deflated 43%)