TCC 1.9.2
Jianqiang Sun , Tomoaki Nishiyama
| Snapshot Date: 2015-08-19 16:24:33 -0700 (Wed, 19 Aug 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/TCC | | Last Changed Rev: 106476 / Revision: 107602 | | Last Changed Date: 2015-07-16 01:45:56 -0700 (Thu, 16 Jul 2015) |
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | OK | |  |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | [ OK ] | OK | |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK | OK | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK | |
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf TCC.buildbin-libdir TCC.Rcheck && mkdir TCC.buildbin-libdir TCC.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=TCC.buildbin-libdir TCC_1.9.2.tar.gz >TCC.Rcheck\00install.out 2>&1 && cp TCC.Rcheck\00install.out TCC-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=TCC.buildbin-libdir --install="check:TCC-install.out" --force-multiarch --no-vignettes --timings TCC_1.9.2.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'D:/biocbld/bbs-3.2-bioc/meat/TCC.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'TCC/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'TCC' version '1.9.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'TCC' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [100s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
simulateReadCounts 15.86 0.02 15.88
TCC-class 14.79 0.06 14.86
calcAUCValue 13.54 0.02 13.56
calcNormFactors 12.26 0.00 12.26
plotFCPseudocolor 9.77 0.00 9.77
plot.TCC 9.48 0.06 9.56
hypoData_mg 5.12 0.00 5.11
** running examples for arch 'x64' ... [110s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
simulateReadCounts 20.11 0.01 20.12
calcAUCValue 14.84 0.03 14.86
TCC-class 14.48 0.02 14.50
plotFCPseudocolor 12.31 0.00 12.30
calcNormFactors 11.90 0.02 11.92
plot.TCC 10.25 0.00 10.25
hypoData 5.74 0.00 5.74
hypoData_mg 5.72 0.00 5.73
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'runTests.R' [424s]
[424s] OK
** running tests for arch 'x64' ...
Running 'runTests.R' [477s]
[477s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
install for i386
* installing *source* package 'TCC' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for 'calcNormFactors' in package 'TCC'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'TCC' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'TCC' as TCC_1.9.2.zip
* DONE (TCC)