BioC 3.2: CHECK report for SummarizedExperiment on windows1.bioconductor.org

Package: SummarizedExperiment

Version: 1.0.0

Command: rm -rf SummarizedExperiment.buildbin-libdir SummarizedExperiment.Rcheck && mkdir SummarizedExperiment.buildbin-libdir SummarizedExperiment.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=SummarizedExperiment.buildbin-libdir SummarizedExperiment_1.0.0.tar.gz >SummarizedExperiment.Rcheck\00install.out 2>&1 && cp SummarizedExperiment.Rcheck\00install.out SummarizedExperiment-install.out && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=SummarizedExperiment.buildbin-libdir --install="check:SummarizedExperiment-install.out" --force-multiarch --no-vignettes --timings SummarizedExperiment_1.0.0.tar.gz

StartedAt: 2015-10-27 05:59:16 -0400 (Tue, 27 Oct 2015)

EndedAt: 2015-10-27 06:01:54 -0400 (Tue, 27 Oct 2015)

EllapsedTime: 157.9 seconds

RetCode: 0

Status:  OK

CheckDir: SummarizedExperiment.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf SummarizedExperiment.buildbin-libdir SummarizedExperiment.Rcheck && mkdir SummarizedExperiment.buildbin-libdir SummarizedExperiment.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=SummarizedExperiment.buildbin-libdir SummarizedExperiment_1.0.0.tar.gz >SummarizedExperiment.Rcheck\00install.out 2>&1 && cp SummarizedExperiment.Rcheck\00install.out SummarizedExperiment-install.out  && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=SummarizedExperiment.buildbin-libdir --install="check:SummarizedExperiment-install.out" --force-multiarch --no-vignettes --timings SummarizedExperiment_1.0.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/biocbld/bbs-3.2-bioc/meat/SummarizedExperiment.Rcheck'
* using R version 3.2.2 Patched (2015-08-16 r69094)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'SummarizedExperiment/DESCRIPTION' ... OK
* this is package 'SummarizedExperiment' version '1.0.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SummarizedExperiment' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [12s] OK
Examples with CPU or elapsed time > 5s
                                          user system elapsed
makeSummarizedExperimentFromExpressionSet 5.55   0.05    5.59
** running examples for arch 'x64' ... [13s] OK
Examples with CPU or elapsed time > 5s
                                          user system elapsed
makeSummarizedExperimentFromExpressionSet 6.66   0.15    6.82
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'SummarizedExperiment_unit_tests.R' [14s]
 [14s] OK
** running tests for arch 'x64' ...
  Running 'SummarizedExperiment_unit_tests.R' [16s]
 [16s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'SummarizedExperiment' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'SummarizedExperiment' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SummarizedExperiment' as SummarizedExperiment_1.0.0.zip
* DONE (SummarizedExperiment)

name	user	system	elapsed
Assays-class	0.03	0.00	0.03
RangedSummarizedExperiment-class	0.20	0.00	0.21
SummarizedExperiment0-class	0.03	0.00	0.03
coverage-methods	0.05	0.00	0.05
findOverlaps-methods	0.09	0.00	0.09
inter-range-methods	0.09	0.00	0.10
intra-range-methods	0.08	0.00	0.08
makeSummarizedExperimentFromExpressionSet	5.55	0.05	5.59
nearest-methods	0.84	0.05	0.90
readKallisto	1.51	0.03	1.54

name	user	system	elapsed
Assays-class	0.04	0.00	0.05
RangedSummarizedExperiment-class	0.25	0.00	0.25
SummarizedExperiment0-class	0.05	0.00	0.04
coverage-methods	0.06	0.00	0.07
findOverlaps-methods	0.11	0.00	0.11
inter-range-methods	0.13	0.00	0.12
intra-range-methods	0.09	0.00	0.09
makeSummarizedExperimentFromExpressionSet	6.66	0.15	6.82
nearest-methods	0.61	0.00	0.61
readKallisto	1.12	0.02	1.14