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BioC 3.2: INSTALL report for SNPRelate on moscato1

This page was generated on 2015-08-20 13:23:08 -0700 (Thu, 20 Aug 2015).

Package 961/1069HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SNPRelate 1.3.8
Xiuwen Zheng
Snapshot Date: 2015-08-19 16:24:33 -0700 (Wed, 19 Aug 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/SNPRelate
Last Changed Rev: 106908 / Revision: 107602
Last Changed Date: 2015-07-29 17:44:46 -0700 (Wed, 29 Jul 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: SNPRelate
Version: 1.3.8
Command: C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.2/bioc/src/contrib/SNPRelate_1.3.8.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch SNPRelate_1.3.8.tar.gz && rm SNPRelate_1.3.8.tar.gz
StartedAt: 2015-08-19 17:48:09 -0700 (Wed, 19 Aug 2015)
EndedAt: 2015-08-19 17:51:24 -0700 (Wed, 19 Aug 2015)
EllapsedTime: 195.2 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.2/bioc/src/contrib/SNPRelate_1.3.8.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch SNPRelate_1.3.8.tar.gz && rm SNPRelate_1.3.8.tar.gz
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1019k  100 1019k    0     0  32.4M      0 --:--:-- --:--:-- --:--:-- 45.2M

install for i386

* installing to library 'D:/biocbld/bbs-3.2-bioc/R/library'
* installing *source* package 'SNPRelate' ...
** libs
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I.   -I"D:/biocbld/bbs-3.2-bioc/R/library/gdsfmt/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c ConvToGDS.cpp -o ConvToGDS.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I.   -I"D:/biocbld/bbs-3.2-bioc/R/library/gdsfmt/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c R_SNPRelate.c -o R_SNPRelate.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I.   -I"D:/biocbld/bbs-3.2-bioc/R/library/gdsfmt/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c SNPRelate.cpp -o SNPRelate.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I.   -I"D:/biocbld/bbs-3.2-bioc/R/library/gdsfmt/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c dGenGWAS.cpp -o dGenGWAS.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I.   -I"D:/biocbld/bbs-3.2-bioc/R/library/gdsfmt/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c dVect.cpp -o dVect.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I.   -I"D:/biocbld/bbs-3.2-bioc/R/library/gdsfmt/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c genFst.cpp -o genFst.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I.   -I"D:/biocbld/bbs-3.2-bioc/R/library/gdsfmt/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c genHWE.cpp -o genHWE.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I.   -I"D:/biocbld/bbs-3.2-bioc/R/library/gdsfmt/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c genIBD.cpp -o genIBD.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I.   -I"D:/biocbld/bbs-3.2-bioc/R/library/gdsfmt/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c genIBS.cpp -o genIBS.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I.   -I"D:/biocbld/bbs-3.2-bioc/R/library/gdsfmt/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c genKING.cpp -o genKING.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I.   -I"D:/biocbld/bbs-3.2-bioc/R/library/gdsfmt/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c genLD.cpp -o genLD.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I.   -I"D:/biocbld/bbs-3.2-bioc/R/library/gdsfmt/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c genPCA.cpp -o genPCA.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I.   -I"D:/biocbld/bbs-3.2-bioc/R/library/gdsfmt/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c genRec.cpp -o genRec.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I.   -I"D:/biocbld/bbs-3.2-bioc/R/library/gdsfmt/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c genSlideWin.cpp -o genSlideWin.o
g++ -m32 -shared -s -static-libgcc -o SNPRelate.dll tmp.def ConvToGDS.o R_SNPRelate.o SNPRelate.o dGenGWAS.o dVect.o genFst.o genHWE.o genIBD.o genIBS.o genKING.o genLD.o genPCA.o genRec.o genSlideWin.o -lgfortran -LD:/biocbld/BBS-3˜1.2-B/R/bin/i386 -lRblas -LD:/biocbld/BBS-3˜1.2-B/R/bin/i386 -lRlapack -Ld:/RCompile/r-compiling/local/local320/lib/i386 -Ld:/RCompile/r-compiling/local/local320/lib -LD:/biocbld/BBS-3˜1.2-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-3.2-bioc/R/library/SNPRelate/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing to library 'D:/biocbld/bbs-3.2-bioc/R/library'
* installing *source* package 'SNPRelate' ...
** libs
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I.   -I"D:/biocbld/bbs-3.2-bioc/R/library/gdsfmt/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c ConvToGDS.cpp -o ConvToGDS.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I.   -I"D:/biocbld/bbs-3.2-bioc/R/library/gdsfmt/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c R_SNPRelate.c -o R_SNPRelate.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I.   -I"D:/biocbld/bbs-3.2-bioc/R/library/gdsfmt/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c SNPRelate.cpp -o SNPRelate.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I.   -I"D:/biocbld/bbs-3.2-bioc/R/library/gdsfmt/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c dGenGWAS.cpp -o dGenGWAS.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I.   -I"D:/biocbld/bbs-3.2-bioc/R/library/gdsfmt/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c dVect.cpp -o dVect.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I.   -I"D:/biocbld/bbs-3.2-bioc/R/library/gdsfmt/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c genFst.cpp -o genFst.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I.   -I"D:/biocbld/bbs-3.2-bioc/R/library/gdsfmt/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c genHWE.cpp -o genHWE.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I.   -I"D:/biocbld/bbs-3.2-bioc/R/library/gdsfmt/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c genIBD.cpp -o genIBD.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I.   -I"D:/biocbld/bbs-3.2-bioc/R/library/gdsfmt/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c genIBS.cpp -o genIBS.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I.   -I"D:/biocbld/bbs-3.2-bioc/R/library/gdsfmt/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c genKING.cpp -o genKING.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I.   -I"D:/biocbld/bbs-3.2-bioc/R/library/gdsfmt/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c genLD.cpp -o genLD.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I.   -I"D:/biocbld/bbs-3.2-bioc/R/library/gdsfmt/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c genPCA.cpp -o genPCA.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I.   -I"D:/biocbld/bbs-3.2-bioc/R/library/gdsfmt/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c genRec.cpp -o genRec.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I.   -I"D:/biocbld/bbs-3.2-bioc/R/library/gdsfmt/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c genSlideWin.cpp -o genSlideWin.o
g++ -m64 -shared -s -static-libgcc -o SNPRelate.dll tmp.def ConvToGDS.o R_SNPRelate.o SNPRelate.o dGenGWAS.o dVect.o genFst.o genHWE.o genIBD.o genIBS.o genKING.o genLD.o genPCA.o genRec.o genSlideWin.o -lgfortran -LD:/biocbld/BBS-3˜1.2-B/R/bin/x64 -lRblas -LD:/biocbld/BBS-3˜1.2-B/R/bin/x64 -lRlapack -Ld:/RCompile/r-compiling/local/local320/lib/x64 -Ld:/RCompile/r-compiling/local/local320/lib -LD:/biocbld/BBS-3˜1.2-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-3.2-bioc/R/library/SNPRelate/libs/x64
** testing if installed package can be loaded
* DONE (SNPRelate)