BioC 3.2: CHECK report for Path2PPI on windows1.bioconductor.org

Package: Path2PPI

Version: 1.0.0

Command: rm -rf Path2PPI.buildbin-libdir Path2PPI.Rcheck && mkdir Path2PPI.buildbin-libdir Path2PPI.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Path2PPI.buildbin-libdir Path2PPI_1.0.0.tar.gz >Path2PPI.Rcheck\00install.out 2>&1 && cp Path2PPI.Rcheck\00install.out Path2PPI-install.out && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=Path2PPI.buildbin-libdir --install="check:Path2PPI-install.out" --force-multiarch --no-vignettes --timings Path2PPI_1.0.0.tar.gz

StartedAt: 2015-10-27 04:18:33 -0400 (Tue, 27 Oct 2015)

EndedAt: 2015-10-27 04:20:03 -0400 (Tue, 27 Oct 2015)

EllapsedTime: 90.4 seconds

RetCode: 0

Status:  OK

CheckDir: Path2PPI.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf Path2PPI.buildbin-libdir Path2PPI.Rcheck && mkdir Path2PPI.buildbin-libdir Path2PPI.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Path2PPI.buildbin-libdir Path2PPI_1.0.0.tar.gz >Path2PPI.Rcheck\00install.out 2>&1 && cp Path2PPI.Rcheck\00install.out Path2PPI-install.out  && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=Path2PPI.buildbin-libdir --install="check:Path2PPI-install.out" --force-multiarch --no-vignettes --timings Path2PPI_1.0.0.tar.gz
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* using log directory 'C:/biocbld/bbs-3.2-bioc/meat/Path2PPI.Rcheck'
* using R version 3.2.2 Patched (2015-08-16 r69094)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Path2PPI/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'Path2PPI' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Path2PPI' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [21s] OK
Examples with CPU or elapsed time > 5s
           user system elapsed
predictPPI 6.97   0.02    7.01
** running examples for arch 'x64' ... [30s] OK
Examples with CPU or elapsed time > 5s
           user system elapsed
predictPPI 11.4   0.02   11.69
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R' [8s]
 [8s] OK
** running tests for arch 'x64' ...
  Running 'runTests.R' [4s]
 [5s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'Path2PPI' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'Path2PPI' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Path2PPI' as Path2PPI_1.0.0.zip
* DONE (Path2PPI)

name	user	system	elapsed
Path2PPI	0	0	0
addReference	0.78	0.00	0.79
ai	0.30	0.02	0.31
getHybridNetwork	2.42	0.01	2.44
getPPI	2.32	0.01	2.33
homologyScore	0	0	0
plot.Path2PPI	2.46	0.00	2.47
predictPPI	6.97	0.02	7.01
removeReference	0.91	0.00	0.91
showInteraction	4.02	0.00	4.02
showReferences	0.78	0.00	0.78

name	user	system	elapsed
Path2PPI	0	0	0
addReference	1.17	0.00	1.17
ai	0.12	0.01	0.14
getHybridNetwork	3.31	0.04	4.41
getPPI	2.94	0.00	2.93
homologyScore	0	0	0
plot.Path2PPI	2.89	0.01	2.91
predictPPI	11.40	0.02	11.69
removeReference	0.93	0.01	1.54
showInteraction	4.19	0.03	4.42
showReferences	0.63	0.00	0.62