PGA 1.0.0
Bo Wen , Shaohang Xu
| Snapshot Date: 2015-10-26 19:24:07 -0400 (Mon, 26 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/PGA | | Last Changed Rev: 109589 / Revision: 109947 | | Last Changed Date: 2015-10-13 15:36:05 -0400 (Tue, 13 Oct 2015) |
| linux1.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | [ ERROR ] | skipped | | |
| windows1.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | WARNINGS | OK |  |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | WARNINGS | OK | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | WARNINGS | OK | |
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### Running command:
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### /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data PGA
###
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* checking for file ‘PGA/DESCRIPTION’ ... OK
* preparing ‘PGA’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Warning: replacing previous import by 'IRanges::shift' when loading 'PGA'
Loading required package: BSgenome
Loading required package: rtracklayer
Output variation table and variant protein sequence caused bySNVs... done
Output novel junction peptides... Loading required package: GenomicFeatures
Loading required package: AnnotationDbi
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with 'browseVignettes()'. To
cite Bioconductor, see 'citation("Biobase")', and for packages
'citation("pkgname")'.
Warning in .Call2("DNAStringSet_translate", x, skip_code, dna_codes[codon_alphabet], :
in 'x[[1]]': last base was ignored
Warning in .Call2("DNAStringSet_translate", x, skip_code, dna_codes[codon_alphabet], :
in 'x[[2]]': last base was ignored
Warning in .Call2("DNAStringSet_translate", x, skip_code, dna_codes[codon_alphabet], :
in 'x[[3]]': last 2 bases were ignored
Warning in .Call2("DNAStringSet_translate", x, skip_code, dna_codes[codon_alphabet], :
in 'x[[4]]': last 2 bases were ignored
Warning in .Call2("DNAStringSet_translate", x, skip_code, dna_codes[codon_alphabet], :
in 'x[[6]]': last 2 bases were ignored
Warning in .Call2("DNAStringSet_translate", x, skip_code, dna_codes[codon_alphabet], :
in 'x[[7]]': last 2 bases were ignored
Warning in .Call2("DNAStringSet_translate", x, skip_code, dna_codes[codon_alphabet], :
in 'x[[8]]': last 2 bases were ignored
Warning in .Call2("DNAStringSet_translate", x, skip_code, dna_codes[codon_alphabet], :
in 'x[[9]]': last 2 bases were ignored
Warning in .Call2("DNAStringSet_translate", x, skip_code, dna_codes[codon_alphabet], :
in 'x[[3]]': last base was ignored
Warning in .Call2("DNAStringSet_translate", x, skip_code, dna_codes[codon_alphabet], :
in 'x[[4]]': last base was ignored
Warning in .Call2("DNAStringSet_translate", x, skip_code, dna_codes[codon_alphabet], :
in 'x[[5]]': last 2 bases were ignored
Warning in .Call2("DNAStringSet_translate", x, skip_code, dna_codes[codon_alphabet], :
in 'x[[6]]': last base was ignored
Warning in .Call2("DNAStringSet_translate", x, skip_code, dna_codes[codon_alphabet], :
in 'x[[7]]': last base was ignored
Warning in .Call2("DNAStringSet_translate", x, skip_code, dna_codes[codon_alphabet], :
in 'x[[8]]': last base was ignored
Warning in .Call2("DNAStringSet_translate", x, skip_code, dna_codes[codon_alphabet], :
in 'x[[9]]': last base was ignored
Warning in .Call2("DNAStringSet_translate", x, skip_code, dna_codes[codon_alphabet], :
in 'x[[1]]': last 2 bases were ignored
Warning in .Call2("DNAStringSet_translate", x, skip_code, dna_codes[codon_alphabet], :
in 'x[[2]]': last 2 bases were ignored
Warning in .Call2("DNAStringSet_translate", x, skip_code, dna_codes[codon_alphabet], :
in 'x[[5]]': last base was ignored
done
Output novel transripts... Import genomic features from the file as a GRanges object ... OK
Prepare the 'metadata' data frame ... OK
Make the TxDb object ... OK
====== Processing reverse strand ======
====== Processing forward strand ======
====== Processing unknown strand ======
done
Cat all fasta ... done
*** buffer overflow detected ***: /home/biocbuild/bbs-3.2-bioc/R/bin/exec/R terminated
======= Backtrace: =========
/lib/x86_64-linux-gnu/libc.so.6(+0x7338f)[0x7fbbd482038f]
/lib/x86_64-linux-gnu/libc.so.6(__fortify_fail+0x5c)[0x7fbbd48b7c9c]
/lib/x86_64-linux-gnu/libc.so.6(+0x109b60)[0x7fbbd48b6b60]
/lib/x86_64-linux-gnu/libc.so.6(+0x109069)[0x7fbbd48b6069]
/lib/x86_64-linux-gnu/libc.so.6(_IO_default_xsputn+0xbc)[0x7fbbd482870c]
/lib/x86_64-linux-gnu/libc.so.6(__printf_fp+0x1849)[0x7fbbd47fdb29]
/lib/x86_64-linux-gnu/libc.so.6(_IO_vfprintf+0x315b)[0x7fbbd47f9e4b]
/lib/x86_64-linux-gnu/libc.so.6(__vsprintf_chk+0x84)[0x7fbbd48b60f4]
/lib/x86_64-linux-gnu/libc.so.6(__sprintf_chk+0x7d)[0x7fbbd48b604d]
/home/biocbuild/bbs-3.2-bioc/R/library/rTANDEM/libs/rTANDEM.so(_ZN8mprocess6reportEv+0x1146)[0x7fbbca12c696]
/home/biocbuild/bbs-3.2-bioc/R/library/rTANDEM/libs/rTANDEM.so(tandem+0xccd)[0x7fbbca166efd]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(+0xd9b38)[0x7fbbd4e69b38]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(Rf_eval+0x6fb)[0x7fbbd4ea8eab]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(+0x11c10e)[0x7fbbd4eac10e]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(Rf_eval+0x503)[0x7fbbd4ea8cb3]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(+0x11b030)[0x7fbbd4eab030]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(Rf_eval+0x503)[0x7fbbd4ea8cb3]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(Rf_applyClosure+0x57f)[0x7fbbd4eaa03f]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(Rf_eval+0x2df)[0x7fbbd4ea8a8f]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(+0x11c10e)[0x7fbbd4eac10e]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(Rf_eval+0x503)[0x7fbbd4ea8cb3]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(+0x11b030)[0x7fbbd4eab030]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(Rf_eval+0x503)[0x7fbbd4ea8cb3]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(Rf_applyClosure+0x57f)[0x7fbbd4eaa03f]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(Rf_eval+0x2df)[0x7fbbd4ea8a8f]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(+0x11c10e)[0x7fbbd4eac10e]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(Rf_eval+0x503)[0x7fbbd4ea8cb3]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(+0x11d2ea)[0x7fbbd4ead2ea]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(+0x10aa9b)[0x7fbbd4e9aa9b]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(Rf_eval+0x160)[0x7fbbd4ea8910]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(Rf_applyClosure+0x57f)[0x7fbbd4eaa03f]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(Rf_eval+0x2df)[0x7fbbd4ea8a8f]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(+0x119188)[0x7fbbd4ea9188]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(Rf_eval+0x761)[0x7fbbd4ea8f11]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(+0x11d7f1)[0x7fbbd4ead7f1]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(+0x14abc9)[0x7fbbd4edabc9]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(+0x10be48)[0x7fbbd4e9be48]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(Rf_eval+0x160)[0x7fbbd4ea8910]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(Rf_applyClosure+0x57f)[0x7fbbd4eaa03f]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(Rf_eval+0x2df)[0x7fbbd4ea8a8f]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(+0x119188)[0x7fbbd4ea9188]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(+0x117127)[0x7fbbd4ea7127]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(Rf_eval+0x160)[0x7fbbd4ea8910]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(Rf_applyClosure+0x57f)[0x7fbbd4eaa03f]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(Rf_eval+0x2df)[0x7fbbd4ea8a8f]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(+0x11c10e)[0x7fbbd4eac10e]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(Rf_eval+0x503)[0x7fbbd4ea8cb3]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(+0x119188)[0x7fbbd4ea9188]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(+0x117127)[0x7fbbd4ea7127]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(Rf_eval+0x160)[0x7fbbd4ea8910]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(Rf_applyClosure+0x57f)[0x7fbbd4eaa03f]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(Rf_eval+0x2df)[0x7fbbd4ea8a8f]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(+0x11b030)[0x7fbbd4eab030]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(Rf_eval+0x503)[0x7fbbd4ea8cb3]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(+0x11e8df)[0x7fbbd4eae8df]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(Rf_eval+0x503)[0x7fbbd4ea8cb3]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(+0x11b030)[0x7fbbd4eab030]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(Rf_eval+0x503)[0x7fbbd4ea8cb3]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(Rf_applyClosure+0x57f)[0x7fbbd4eaa03f]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(Rf_eval+0x2df)[0x7fbbd4ea8a8f]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(+0x11b476)[0x7fbbd4eab476]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(Rf_eval+0x503)[0x7fbbd4ea8cb3]
/home/biocbuild/bbs-3.2-bioc/R/lib/libR.so(+0x11b030)[0x7fbbd4eab030]
======= Memory map: ========
00400000-00401000 r-xp 00000000 ca:01 19275310 /home/biocbuild/bbs-3.2-bioc/R/bin/exec/R
00600000-00601000 r--p 00000000 ca:01 19275310 /home/biocbuild/bbs-3.2-bioc/R/bin/exec/R
00601000-00602000 rw-p 00001000 ca:01 19275310 /home/biocbuild/bbs-3.2-bioc/R/bin/exec/R
0083d000-27da0000 rw-p 00000000 00:00 0 [heap]
7fbba0000000-7fbba0083000 rw-p 00000000 00:00 0
7fbba0083000-7fbba4000000 ---p 00000000 00:00 0
7fbba8000000-7fbba8083000 rw-p 00000000 00:00 0
7fbba8083000-7fbbac000000 ---p 00000000 00:00 0
7fbbac000000-7fbbac083000 rw-p 00000000 00:00 0
7fbbac083000-7fbbb0000000 ---p 00000000 00:00 0
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7fbbc149e000-7fbbc1c9e000 rw-p 00000000 00:00 0
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7fbbc249f000-7fbbc24a0000 ---p 00000000 00:00 0
7fbbc24a0000-7fbbc2ca0000 rw-p 00000000 00:00 0
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7fbbc2ca1000-7fbbc34a1000 rw-p 00000000 00:00 0
7fbbc34a1000-7fbbc34bf000 r-xp 00000000 ca:01 79954465 /home/biocbuild/bbs-3.2-bioc/R/library/VariantAnnotation/libs/VariantAnnotation.so
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7fbbc3719000-7fbbc3919000 ---p 00059000 ca:01 79825670 /home/biocbuild/bbs-3.2-bioc/R/library/rtracklayer/libs/rtracklayer.so
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7fbbc3926000-7fbbc3934000 r-xp 00000000 ca:01 79825412 /home/biocbuild/bbs-3.2-bioc/R/library/GenomicAlignments/libs/GenomicAlignments.so
7fbbc3934000-7fbbc3b33000 ---p 0000e000 ca:01 79825412 /home/biocbuild/bbs-3.2-bioc/R/library/GenomicAlignments/libs/GenomicAlignments.so
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7fbbc4ff9000-7fbbc51f8000 ---p 0000d000 ca:01 8093 /usr/lib/x86_64-linux-gnu/libheimbase.so.1.0.0
7fbbc51f8000-7fbbc51f9000 r--p 0000c000 ca:01 8093 /usr/lib/x86_64-linux-gnu/libheimbase.so.1.0.0
7fbbc51f9000-7fbbc51fa000 rw-p 0000d000 ca:01 8093 /usr/lib/x86_64-linux-gnu/libheimbase.so.1.0.0
7fbbc51fa000-7fbbc5221000 r-xp 00000000 ca:01 8139 /usr/lib/x86_64-linux-gnu/libwind.so.0.0.0
7fbbc5221000-7fbbc5421000 ---p 00027000 ca:01 8139 /usr/lib/x86_64-linux-gnu/libwind.so.0.0.0
7fbbc5421000-7fbbc5422000 r--p 00027000 ca:01 8139 /usr/lib/x86_64-linux-gnu/libwind.so.0.0.0
7fbbc5422000-7fbbc5423000 rw-p 00028000 ca:01 8139 /usr/lib/x86_64-linux-gnu/libwind.so.0.0.0
7fbbc5423000-7fbbc542a000 r-xp 00000000 ca:01 8071 /usr/lib/x86_64-linux-gnu/libffi.so.6.0.1
7fbbc542a000-7fbbc5629000 ---p 00007000 ca:01 8071 /usr/lib/x86_64-linux-gnu/libffi.so.6.0.1
7fbbc5629000-7fbbc562a000 r--p 00006000 ca:01 8071 /usr/lib/x86_64-linux-gnu/libffi.so.6.0.1
7fbbc562a000-7fbbc562b000 rw-p 00007000 ca:01 8071 /usr/lib/x86_64-linux-gnu/libffi.so.6.0.1
7fbbc562b000-7fbbc563f000 r-xp 00000000 ca:01 8128 /usr/lib/x86_64-linux-gnu/libroken.so.18.1.0
7fbbc563f000-7fbbc583e000 ---p 00014000 ca:01 8128 /usr/lib/x86_64-linux-gnu/libroken.so.18.1.0
7fbbc583e000-7fbbc583f000 r--p 00013000 ca:01 8128 /usr/lib/x86_64-linux-gnu/libroken.so.18.1.0
7fbbc583f000-7fbbc5840000 rw-p 00014000 ca:01 8128 /usr/lib/x86_64-linux-gnu/libroken.so.18.1.0
7fbbc5840000-7fbbc5870000 r-xp 00000000 ca:01 8092 /usr/lib/x86_64-linux-gnu/libhcrypto.so.4.1.0
7fbbc5870000-7fbbc5a70000 ---p 00030000 ca:01 8092 /usr/lib/x86_64-linux-gnu/libhcrypto.so.4.1.0
7fbbc5a70000-7fbbc5a71000 r--p 00030000 ca:01 8092 /usr/lib/x86_64-linux-gnu/libhcrypto.so.4.1.0
7fbbc5a71000-7fbbc5a72000 rw-p 00031000 ca:01 8092 /usr/lib/x86_64-linux-gnu/libhcrypto.so.4.1.0
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7fbbc5b10000-7fbbc5d10000 ---p 0009d000 ca:01 8054 /usr/lib/x86_64-linux-gnu/libasn1.so.8.0.0
7fbbc5d10000-7fbbc5d11000 r--p 0009d000 ca:01 8054 /usr/lib/x86_64-linux-gnu/libasn1.so.8.0.0
7fbbc5d11000-7fbbc5d14000 rw-p 0009e000 ca:01 8054 /usr/lib/x86_64-linux-gnu/libasn1.so.8.0.0
7fbbc5d14000-7fbbc5d96000 r-xp 00000000 ca:01 8106 /usr/lib/x86_64-linux-gnu/libkrb5.so.26.0.0
7fbbc5d96000-7fbbc5f95000 ---p 00082000 ca:01 8106 /usr/lib/x86_64-linux-gnu/libkrb5.so.26.0.0
7fbbc5f95000-7fbbc5f98000 r--p 00081000 ca:01 8106 /usr/lib/x86_64-linux-gnu/libkrb5.so.26.0.0
7fbbc5f98000-7fbbc5f9b000 rw-p 00084000 ca:01 8106 /usr/lib/x86_64-linux-gnu/libkrb5.so.26.0.0
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7fbbc5f9c000-7fbbc5fa4000 r-xp 00000000 ca:01 8094 /usr/lib/x86_64-linux-gnu/libheimntlm.so.0.1.0
7fbbc5fa4000-7fbbc61a3000 ---p 00008000 ca:01 8094 /usr/lib/x86_64-linux-gnu/libheimntlm.so.0.1.0
7fbbc61a3000-7fbbc61a4000 r--p 00007000 ca:01 8094 /usr/lib/x86_64-linux-gnu/libheimntlm.so.0.1.0
7fbbc61a4000-7fbbc61a5000 rw-p 00008000 ca:01 8094 /usr/lib/x86_64-linux-gnu/libheimntlm.so.0.1.0
7fbbc61a5000-7fbbc61a7000 r-xp 00000000 ca:01 396067 /lib/x86_64-linux-gnu/libkeyutils.so.1.4
7fbbc61a7000-7fbbc63a7000 ---p 00002000 ca:01 396067 /lib/x86_64-linux-gnu/libkeyutils.so.1.4
7fbbc63a7000-7fbbc63a8000 r--p 00002000 ca:01 396067 /lib/x86_64-linux-gnu/libkeyutils.so.1.4
7fbbc63a8000-7fbbc63a9000 rw-p 00003000 ca:01 396067 /lib/x86_64-linux-gnu/libkeyutils.so.1.4
7fbbc63a9000-7fbbc63ad000 r-xp 00000000 ca:01 396064 /lib/x86_64-linux-gnu/libgpg-error.so.0.10.0
7fbbc63ad000-7fbbc65ac000 ---p 00004000 ca:01 396064 /lib/x86_64-linux-gnu/libgpg-error.so.0.10.0
7fbbc65ac000-7fbbc65ad000 r--p 00003000 ca:01 396064 /lib/x86_64-linux-gnu/libgpg-error.so.0.10.0
7fbbc65ad000-7fbbc65ae000 rw-p 00004000 ca:01 396064 /lib/x86_64-linux-gnu/libgpg-error.so.0.10.0
7fbbc65ae000-7fbbc65e9000 r-xp 00000000 ca:01 8118 /usr/lib/x86_64-linux-gnu/libp11-kit.so.0.0.0
7fbbc65e9000-7fbbc67e8000 ---p 0003b000 ca:01 8118 /usr/lib/x86_64-linux-gnu/libp11-kit.so.0.0.0
7fbbc67e8000-7fbbc67ee000 r--p 0003a000 ca:01 8118 /usr/lib/x86_64-linux-gnu/libp11-kit.so.0.0.0
7fbbc67ee000-7fbbc67f0000 rw-p 00040000 ca:01 8118 /usr/lib/x86_64-linux-gnu/libp11-kit.so.0.0.0
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7fbbc6802000-7fbbc6a02000 ---p 00012000 ca:01 8136 /usr/lib/x86_64-linux-gnu/libtasn1.so.6.2.0
7fbbc6a02000-7fbbc6a03000 r--p 00012000 ca:01 8136 /usr/lib/x86_64-linux-gnu/libtasn1.so.6.2.0
7fbbc6a03000-7fbbc6a04000 rw-p 00013000 ca:01 8136 /usr/lib/x86_64-linux-gnu/libtasn1.so.6.2.0
7fbbc6a04000-7fbbc6a3e000 r-xp 00000000 ca:01 8089 /usr/lib/x86_64-linux-gnu/libgssapi.so.3.0.0
7fbbc6a3e000-7fbbc6c3e000 ---p 0003a000 ca:01 8089 /usr/lib/x86_64-linux-gnu/libgssapi.so.3.0.0
7fbbc6c3e000-7fbbc6c3f000 r--p 0003a000 ca:01 8089 /usr/lib/x86_64-linux-gnu/libgssapi.so.3.0.0
7fbbc6c3f000-7fbbc6c41000 rw-p 0003b000 ca:01 8089 /usr/lib/x86_64-linux-gnu/libgssapi.so.3.0.0
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7fbbc6c5b000-7fbbc6e5b000 ---p 00019000 ca:01 8130 /usr/lib/x86_64-linux-gnu/libsasl2.so.2.0.25
7fbbc6e5b000-7fbbc6e5c000 r--p 00019000 ca:01 8130 /usr/lib/x86_64-linux-gnu/libsasl2.so.2.0.25
7fbbc6e5c000-7fbbc6e5d000 rw-p 0001a000 ca:01 8130 /usr/lib/x86_64-linux-gnu/libsasl2.so.2.0.25
7fbbc6e5d000-7fbbc6e74000 r-xp 00000000 ca:01 396102 /lib/x86_64-linux-gnu/libresolv-2.19.so
7fbbc6e74000-7fbbc7074000 ---p 00017000 ca:01 396102 /lib/x86_64-linux-gnu/libresolv-2.19.so
7fbbc7074000-7fbbc7075000 r--p 00017000 ca:01 396102 /lib/x86_64-linux-gnu/libresolv-2.19.so
7fbbc7075000-7fbbc7076000 rw-p 00018000 ca:01 396102 /lib/x86_64-linux-gnu/libresolv-2.19.so
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7fbbc7082000-7fbbc7281000 ---p 0000a000 ca:01 8108 /usr/lib/x86_64-linux-gnu/libkrb5support.so.0.1
7fbbc7281000-7fbbc7282000 r--p 00009000 ca:01 8108 /usr/lib/x86_64-linux-gnu/libkrb5support.so.0.1
7fbbc7282000-7fbbc7283000 rw-p 0000a000 ca:01 8108 /usr/lib/x86_64-linux-gnu/libkrb5support.so.0.1
7fbbc7283000-7fbbc7286000 r-xp 00000000 ca:01 396051 /lib/x86_64-linux-gnu/libcom_err.so.2.1
7fbbc7286000-7fbbc7485000 ---p 00003000 ca:01 396051 /lib/x86_64-linux-gnu/libcom_err.so.2.1
7fbbc7485000-7fbbc7486000 r--p 00002000 ca:01 396051 /lib/x86_64-linux-gnu/libcom_err.so.2.1
7fbbc7486000-7fbbc7487000 rw-p 00003000 ca:01 396051 /lib/x86_64-linux-gnu/libcom_err.so.2.1
7fbbc7487000-7fbbc74b3000 r-xp 00000000 ca:01 8105 /usr/lib/x86_64-linux-gnu/libk5crypto.so.3.1
7fbbc74b3000-7fbbc76b2000 ---p 0002c000 ca:01 8105 /usr/lib/x86_64-linux-gnu/libk5crypto.so.3.1
7fbbc76b2000-7fbbc76b4000 r--p 0002b000 ca:01 8105 /usr/lib/x86_64-linux-gnu/libk5crypto.so.3.1
7fbbc76b4000-7fbbc76b5000 rw-p 0002d000 ca:01 8105 /usr/lib/x86_64-linux-gnu/libk5crypto.so.3.1
7fbbc76b5000-7fbbc76b6000 rw-p 00000000 00:00 0
7fbbc76b6000-7fbbc7772000 r-xp 00000000 ca:01 8107 /usr/lib/x86_64-linux-gnu/libkrb5.so.3.3
7fbbc7772000-7fbbc7972000 ---p 000bc000 ca:01 8107 /usr/lib/x86_64-linux-gnu/libkrb5.so.3.3
7fbbc7972000-7fbbc797f000 r--p 000bc000 ca:01 8107 /usr/lib/x86_64-linux-gnu/libkrb5.so.3.3
7fbbc797f000-7fbbc7981000 rw-p 000c9000 ca:01 8107 /usr/lib/x86_64-linux-gnu/libkrb5.so.3.3
7fbbc7981000-7fbbc79fd000 r-xp 00000000 ca:01 396062 /lib/x86_64-linux-gnu/libgcrypt.so.11.8.2
7fbbc79fd000-7fbbc7bfd000 ---p 0007c000 ca:01 396062 /lib/x86_64-linux-gnu/libgcrypt.so.11.8.2
7fbbc7bfd000-7fbbc7bfe000 r--p 0007c000 ca:01 396062 /lib/x86_64-linux-gnu/libgcrypt.so.11.8.2
7fbbc7bfe000-7fbbc7c01000 rw-p 0007d000 ca:01 396062 /lib/x86_64-linux-gnu/libgcrypt.so.11.8.2
7fbbc7c01000-7fbbc7cb7000 r-xp 00000000 ca:01 8086 /usr/lib/x86_64-linux-gnu/libgnutls.so.26.22.6
7fbbc7cb7000-7fbbc7eb7000 ---p 000b6000 ca:01 8086 /usr/lib/x86_64-linux-gnu/libgnutls.so.26.22.6
7fbbc7eb7000-7fbbc7ebd000 r--p 000b6000 ca:01 8086 /usr/lib/x86_64-linux-gnu/libgnutls.so.26.22.6
7fbbc7ebd000-7fbbc7ebe000 rw-p 000bc000 ca:01 8086 /usr/lib/x86_64-linux-gnu/libgnutls.so.26.22.6
7fbbc7ebe000-7fbbc7ebf000 rw-p 00000000 00:00 0
7fbbc7ebf000-7fbbc7f0c000 r-xp 00000000 ca:01 8110 /usr/lib/x86_64-linux-gnu/libldap_r-2.4.so.2.8.3
7fbbc7f0c000-7fbbc810b000 ---p 0004d000 ca:01 8110 /usr/lib/x86_64-linux-gnu/libldap_r-2.4.so.2.8.3
7fbbc810b000-7fbbc810d000 r--p 0004c000 ca:01 8110 /usr/lib/x86_64-linux-gnu/libldap_r-2.4.so.2.8.3
7fbbc810d000-7fbbc810e000 rw-p 0004e000 ca:01 8110 /usr/lib/x86_64-linux-gnu/libldap_r-2.4.so.2.8.3
7fbbc810e000-7fbbc8110000 rw-p 00000000 00:00 0
7fbbc8110000-7fbbc811d000 r-xp 00000000 ca:01 8109 /usr/lib/x86_64-linux-gnu/liblber-2.4.so.2.8.3
7fbbc811d000-7fbbc831d000 ---p 0000d000 ca:01 8109 /usr/lib/x86_64-linux-gnu/liblber-2.4.so.2.8.3
7fbbc831d000-7fbbc831e000 r--p 0000d000 ca:01 8109 /usr/lib/x86_64-linux-gnu/liblber-2.4.so.2.8.3
7fbbc831e000-7fbbc831f000 rw-p 0000e000 ca:01 8109 /usr/lib/x86_64-linux-gnu/liblber-2.4.so.2.8.3
7fbbc831f000-7fbbc8362000 r-xp 00000000 ca:01 8090 /usr/lib/x86_64-linux-gnu/libgssapi_krb5.so.2.2
7fbbc8362000-7fbbc8562000 ---p 00043000 ca:01 8090 /usr/lib/x86_64-linux-gnu/libgssapi_krb5.so.2.2
7fbbc8562000-7fbbc8563000 r--p 00043000 ca:01 8090 /usr/lib/x86_64-linux-gnu/libgssapi_krb5.so.2.2
7fbbc8563000-7fbbc8565000 rw-p 00044000 ca:01 8090 /usr/lib/x86_64-linux-gnu/libgssapi_krb5.so.2.2
7fbbc8565000-7fbbc8717000 r-xp 00000000 ca:01 396053 /lib/x86_64-linux-gnu/libcrypto.so.1.0.0
7fbbc8717000-7fbbc8916000 ---p 001b2000 ca:01 396053 /lib/x86_64-linux-gnu/libcrypto.so.1.0.0
7fbbc8916000-7fbbc8931000 r--p 001b1000 ca:01 396053 /lib/x86_64-linux-gnu/libcrypto.so.1.0.0
7fbbc8931000-7fbbc893c000 rw-p 001cc000 ca:01 396053 /lib/x86_64-linux-gnu/libcrypto.so.1.0.0
7fbbc893c000-7fbbc8940000 rw-p 00000000 00:00 0
7fbbc8940000-7fbbc8995000 r-xp 00000000 ca:01 396108 /lib/x86_64-linux-gnu/libssl.so.1.0.0
7fbbc8995000-7fbbc8b95000 ---p 00055000 ca:01 396108 /lib/x86_64-linux-gnu/libssl.so.1.0.0
7fbbc8b95000-7fbbc8b98000 r--p 00055000 ca:01 396108 /lib/x86_64-linux-gnu/libssl.so.1.0.0
7fbbc8b98000-7fbbc8b9f000 rw-p 00058000 ca:01 396108 /lib/x86_64-linux-gnu/libssl.so.1.0.0
7fbbc8b9f000-7fbbc8bb8000 r-xp 00000000 ca:01 8129 /usr/lib/x86_64-linux-gnu/librtmp.so.0
7fbbc8bb8000-7fbbc8db7000 ---p 00019000 ca:01 8129 /usr/lib/x86_64-linux-gnu/librtmp.so.0
7fbbc8db7000-7fbbc8db8000 r--p 00018000 ca:01 8129 /usr/lib/x86_64-linux-gnu/librtmp.so.0
7fbbc8db8000-7fbbc8db9000 rw-p 00019000 ca:01 8129 /usr/lib/x86_64-linux-gnu/librtmp.so.0
7fbbc8db9000-7fbbc8dea000 r-xp 00000000 ca:01 8104 /usr/lib/x86_64-linux-gnu/libidn.so.11.6.11
7fbbc8dea000-7fbbc8fea000 ---p 00031000 ca:01 8104 /usr/lib/x86_64-linux-gnu/libidn.so.11.6.11
7fbbc8fea000-7fbbc8feb000 r--p 00031000 ca:01 8104 /usr/lib/x86_64-linux-gnu/libidn.so.11.6.11
7fbbc8feb000-7fbbc8fec000 rw-p 00032000 ca:01 8104 /usr/lib/x86_64-linux-gnu/libidn.so.11.6.11
7fbbc8fec000-7fbbc9050000 r-xp 00000000 ca:01 8060 /usr/lib/x86_64-linux-gnu/libcurl.so.4.3.0
7fbbc9050000-7fbbc9250000 ---p 00064000 ca:01 8060 /usr/lib/x86_64-linux-gnu/libcurl.so.4.3.0
7fbbc9250000-7fbbc9252000 r--p 00064000 ca:01 8060 /usr/lib/x86_64-linux-gnu/libcurl.so.4.3.0
7fbbc9252000-7fbbc9253000 rw-p 00066000 ca:01 8060 /usr/lib/x86_64-linux-gnu/libcurl.so.4.3.0
7fbbc9253000-7fbbc925f000 r-xp 00000000 ca:01 20056038 /home/biocbuild/bbs-3.2-bioc/R/library/RCurl/libs/RCurl.so
7fbbc925f000-7fbbc945e000 ---p 0000c000 ca:01 20056038 /home/biocbuild/bbs-3.2-bioc/R/library/RCurl/libs/RCurl.so
7fbbc945e000-7fbbc945f000 r--p 0000b000 ca:01 20056038 /home/biocbuild/bbs-3.2-bioc/R/library/RCurl/libs/RCurl.so
7fbbc945f000-7fbbc9463000 rw-p 0000c000 ca:01 20056038 /home/biocbuild/bbs-3.2-bioc/R/library/RCurl/libs/RCurl.so
7fbbc9463000-7fbbc9466000 r-xp 00000000 ca:01 19663299 /home/biocbuild/bbs-3.2-bioc/R/library/bitops/libs/bitops.so
7fbbc9466000-7fbbc9665000 ---p 00003000 ca:01 19663299 /home/biocbuild/bbs-3.2-bioc/R/library/bitops/libs/bitops.so
7fbbc9665000-7fbbc9666000 r--p 00002000 ca:01 19663299 /home/biocbuild/bbs-3.2-bioc/R/library/bitops/libs/bitops.so
7fbbc9666000-7fbbc9667000 rw-p 00003000 ca:01 19663299 /home/biocbuild/bbs-3.2-bioc/R/library/bitops/libs/bitops.so
7fbbc9667000-7fbbc9671000 r-xp 00000000 ca:01 48627722 /home/biocbuild/bbs-3.2-bioc/R/library/scales/libs/scales.so
7fbbc9671000-7fbbc9871000 ---p 0000a000 ca:01 48627722 /home/biocbuild/bbs-3.2-bioc/R/library/scales/libs/scales.so
7fbbc9871000-7fbbc9872000 r--p 0000a000 ca:01 48627722 /home/biocbuild/bbs-3.2-bioc/R/library/scales/libs/scales.so
7fbbc9872000-7fbbc9873000 rw-p 0000b000 ca:01 48627722 /home/biocbuild/bbs-3.2-bioc/R/library/scales/libs/scales.so
7fbbc9873000-7fbbc987c000 r-xp 00000000 ca:01 21759020 /home/biocbuild/bbs-3.2-bioc/R/library/plyr/libs/plyr.so
7fbbc987c000-7fbbc9a7b000 ---p 00009000 ca:01 21759020 /home/biocbuild/bbs-3.2-bioc/R/library/plyr/libs/plyr.so
7fbbc9a7b000-7fbbc9a7c000 r--p 00008000 ca:01 21759020 /home/biocbuild/bbs-3.2-bioc/R/library/plyr/libs/plyr.so
7fbbc9a7c000-7fbbc9a7d000 rw-p 00009000 ca:01 21759020 /home/biocbuild/bbs-3.2-bioc/R/library/plyr/libs/plyr.so
7fbbc9a7d000-7fbbc9a87000 r-xp 00000000 ca:01 24248509 /home/biocbuild/bbs-3.2-bioc/R/library/colorspace/libs/colorspace.so
7fbbc9a87000-7fbbc9c86000 ---p 0000a000 ca:01 24248509 /home/biocbuild/bbs-3.2-bioc/R/library/colorspace/libs/colorspace.so
7fbbc9c86000-7fbbc9c87000 r--p 00009000 ca:01 24248509 /home/biocbuild/bbs-3.2-bioc/R/library/colorspace/libs/colorspace.so
7fbbc9c87000-7fbbc9c88000 rw-p 0000a000 ca:01 24248509 /home/biocbuild/bbs-3.2-bioc/R/library/colorspace/libs/colorspace.so
7fbbc9c88000-7fbbc9ca5000 r-xp 00000000 ca:01 19399209 /home/biocbuild/bbs-3.2-bioc/R/library/grid/libs/grid.so
7fbbc9ca5000-7fbbc9ea4000 ---p 0001d000 ca:01 19399209 /home/biocbuild/bbs-3.2-bioc/R/library/grid/libs/grid.so
7fbbc9ea4000-7fbbc9ea5000 r--p 0001c000 ca:01 19399209 /home/biocbuild/bbs-3.2-bioc/R/library/grid/libs/grid.so
7fbbc9ea5000-7fbbc9ea6000 rw-p 0001d000 ca:01 19399209 /home/biocbuild/bbs-3.2-bioc/R/library/grid/libs/grid.so
7fbbc9ea6000-7fbbc9ecd000 r-xp 00000000 ca:01 395149 /lib/x86_64-linux-gnu/libexpat.so.1.6.0
7fbbc9ecd000-7fbbca0cd000 ---p 00027000 ca:01 395149 /lib/x86_64-linux-gnu/libexpat.so.1.6.0
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7fbbd35b2000-7fbbd37b1000 ---p 00003000 ca:01 396056 /lib/x86_64-linux-gnu/libdl-2.19.so
7fbbd37b1000-7fbbd37b2000 r--p 00002000 ca:01 396056 /lib/x86_64-linux-gnu/libdl-2.19.so
7fbbd37b2000-7fbbd37b3000 rw-p 00003000 ca:01 396056 /lib/x86_64-linux-gnu/libdl-2.19.so
7fbbd37b3000-7fbbd37ba000 r-xp 00000000 ca:01 396103 /lib/x86_64-linux-gnu/librt-2.19.so
7fbbd37ba000-7fbbd39b9000 ---p 00007000 ca:01 396103 /lib/x86_64-linux-gnu/librt-2.19.so
7fbbd39b9000-7fbbd39ba000 r--p 00006000 ca:01 396103 /lib/x86_64-linux-gnu/librt-2.19.so
7fbbd39ba000-7fbbd39bb000 rw-p 00007000 ca:01 396103 /lib/x86_64-linux-gnu/librt-2.19.so
7fbbd39bb000-7fbbd39d3000 r-xp 00000000 ca:01 396120 /lib/x86_64-linux-gnu/libz.so.1.2.8
7fbbd39d3000-7fbbd3bd2000 ---p 00018000 ca:01 396120 /lib/x86_64-linux-gnu/libz.so.1.2.8
7fbbd3bd2000-7fbbd3bd3000 r--p 00017000 ca:01 396120 /lib/x86_64-linux-gnu/libz.so.1.2.8
7fbbd3bd3000-7fbbd3bd4000 rw-p 00018000 ca:01 396120 /lib/x86_64-linux-gnu/libz.so.1.2.8
7fbbd3bd4000-7fbbd3bf5000 r-xp 00000000 ca:01 396069 /lib/x86_64-linux-gnu/liblzma.so.5.0.0
7fbbd3bf5000-7fbbd3df4000 ---p 00021000 ca:01 396069 /lib/x86_64-linux-gnu/liblzma.so.5.0.0
7fbbd3df4000-7fbbd3df5000 r--p 00020000 ca:01 396069 /lib/x86_64-linux-gnu/liblzma.so.5.0.0
7fbbd3df5000-7fbbd3df6000 rw-p 00021000 ca:01 396069 /lib/x86_64-linux-gnu/liblzma.so.5.0.0
7fbbd3df6000-7fbbd3e33000 r-xp 00000000 ca:01 393222 /lib/x86_64-linux-gnu/libpcre.so.3.13.1
7fbbd3e33000-7fbbd4032000 ---p 0003d000 ca:01 393222 /lib/x86_64-linux-gnu/libpcre.so.3.13.1
7fbbd4032000-7fbbd4033000 r--p 0003c000 ca:01 393222 /lib/x86_64-linux-gnu/libpcre.so.3.13.1
7fbbd4033000-7fbbd4034000 rw-p 0003d000 ca:01 393222 /lib/x86_64-linux-gnu/libpcre.so.3.13.1
7fbbd4034000-7fbbd4071000 r-xp 00000000 ca:01 396101 /lib/x86_64-linux-gnu/libreadline.so.6.3
7fbbd4071000-7fbbd4271000 ---p 0003d000 ca:01 396101 /lib/x86_64-linux-gnu/libreadline.so.6.3
7fbbd4271000-7fbbd4273000 r--p 0003d000 ca:01 396101 /lib/x86_64-linux-gnu/libreadline.so.6.3
7fbbd4273000-7fbbd4279000 rw-p 0003f000 ca:01 396101 /lib/x86_64-linux-gnu/libreadline.so.6.3
7fbbd4279000-7fbbd427a000 rw-p 00000000 00:00 0
7fbbd427a000-7fbbd437f000 r-xp 00000000 ca:01 396070 /lib/x86_64-linux-gnu/libm-2.19.so
7fbbd437f000-7fbbd457e000 ---p 00105000 ca:01 396070 /lib/x86_64-linux-gnu/libm-2.19.so
7fbbd457e000-7fbbd457f000 r--p 00104000 ca:01 396070 /lib/x86_64-linux-gnu/libm-2.19.so
7fbbd457f000-7fbbd4580000 rw-p 00105000 ca:01 396070 /lib/x86_64-linux-gnu/libm-2.19.so
7fbbd4580000-7fbbd45ac000 r-xp 00000000 ca:01 19274828 /home/biocbuild/bbs-3.2-bioc/R/lib/libRblas.so
7fbbd45ac000-7fbbd47ab000 ---p 0002c000 ca:01 19274828 /home/biocbuild/bbs-3.2-bioc/R/lib/libRblas.so
7fbbd47ab000-7fbbd47ac000 r--p 0002b000 ca:01 19274828 /home/biocbuild/bbs-3.2-bioc/R/lib/libRblas.so
7fbbd47ac000-7fbbd47ad000 rw-p 0002c000 ca:01 19274828 /home/biocbuild/bbs-3.2-bioc/R/lib/libRblas.so
7fbbd47ad000-7fbbd4968000 r-xp 00000000 ca:01 396047 /lib/x86_64-linux-gnu/libc-2.19.so
7fbbd4968000-7fbbd4b67000 ---p 001bb000 ca:01 396047 /lib/x86_64-linux-gnu/libc-2.19.so
7fbbd4b67000-7fbbd4b6b000 r--p 001ba000 ca:01 396047 /lib/x86_64-linux-gnu/libc-2.19.so
7fbbd4b6b000-7fbbd4b6d000 rw-p 001be000 ca:01 396047 /lib/x86_64-linux-gnu/libc-2.19.so
7fbbd4b6d000-7fbbd4b72000 rw-p 00000000 00:00 0
7fbbd4b72000-7fbbd4b8b000 r-xp 00000000 ca:01 396100 /lib/x86_64-linux-gnu/libpthread-2.19.so
7fbbd4b8b000-7fbbd4d8a000 ---p 00019000 ca:01 396100 /lib/x86_64-linux-gnu/libpthread-2.19.so
7fbbd4d8a000-7fbbd4d8b000 r--p 00018000 ca:01 396100 /lib/x86_64-linux-gnu/libpthread-2.19.so
7fbbd4d8b000-7fbbd4d8c000 rw-p 00019000 ca:01 396100 /lib/x86_64-linux-gnu/libpthread-2.19.so
7fbbd4d8c000-7fbbd4d90000 rw-p 00000000 00:00 0
7fbbd4d90000-7fbbd5045000 r-xp 00000000 ca:01 19275307 /home/biocbuild/bbs-3.2-bioc/R/lib/libR.so
7fbbd5045000-7fbbd5244000 ---p 002b5000 ca:01 19275307 /home/biocbuild/bbs-3.2-bioc/R/lib/libR.so
7fbbd5244000-7fbbd5262000 r--p 002b4000 ca:01 19275307 /home/biocbuild/bbs-3.2-bioc/R/lib/libR.so
7fbbd5262000-7fbbd526f000 rw-p 002d2000 ca:01 19275307 /home/biocbuild/bbs-3.2-bioc/R/lib/libR.so
7fbbd526f000-7fbbd535c000 rw-p 00000000 00:00 0
7fbbd535c000-7fbbd537f000 r-xp 00000000 ca:01 396037 /lib/x86_64-linux-gnu/ld-2.19.so
7fbbd53af000-7fbbd53d6000 rw-p 00000000 00:00 0
7fbbd53d6000-7fbbd555f000 r--p 00000000 ca:01 1578 /usr/lib/locale/locale-archive
7fbbd555f000-7fbbd556a000 rw-p 00000000 00:00 0
7fbbd5572000-7fbbd5573000 rw-p 00000000 00:00 0
7fbbd5573000-7fbbd557a000 r--s 00000000 ca:01 8407 /usr/lib/x86_64-linux-gnu/gconv/gconv-modules.cache
7fbbd557a000-7fbbd557b000 r--p 00000000 ca:01 19398685 /home/biocbuild/bbs-3.2-bioc/R/library/translations/en/LC_MESSAGES/R.mo
7fbbd557b000-7fbbd557e000 rw-p 00000000 00:00 0
7fbbd557e000-7fbbd557f000 r--p 00022000 ca:01 396037 /lib/x86_64-linux-gnu/ld-2.19.so
7fbbd557f000-7fbbd5580000 rw-p 00023000 ca:01 396037 /lib/x86_64-linux-gnu/ld-2.19.so
7fbbd5580000-7fbbd5581000 rw-p 00000000 00:00 0
7ffdc6202000-7ffdc625b000 rw-p 00000000 00:00 0 [stack]
7ffdc62fd000-7ffdc62ff000 r-xp 00000000 00:00 0 [vdso]
ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0 [vsyscall]
Aborted (core dumped)