Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M [N] O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.2: CHECK report for NTW on moscato1

This page was generated on 2015-08-20 13:19:47 -0700 (Thu, 20 Aug 2015).

Package 691/1069HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
NTW 1.19.0
Yuanhua Liu
Snapshot Date: 2015-08-19 16:24:33 -0700 (Wed, 19 Aug 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/NTW
Last Changed Rev: 102594 / Revision: 107602
Last Changed Date: 2015-04-16 13:02:44 -0700 (Thu, 16 Apr 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: NTW
Version: 1.19.0
Command: rm -rf NTW.buildbin-libdir NTW.Rcheck && mkdir NTW.buildbin-libdir NTW.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=NTW.buildbin-libdir NTW_1.19.0.tar.gz >NTW.Rcheck\00install.out 2>&1 && cp NTW.Rcheck\00install.out NTW-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=NTW.buildbin-libdir --install="check:NTW-install.out" --force-multiarch --no-vignettes --timings NTW_1.19.0.tar.gz
StartedAt: 2015-08-20 08:09:35 -0700 (Thu, 20 Aug 2015)
EndedAt: 2015-08-20 08:10:51 -0700 (Thu, 20 Aug 2015)
EllapsedTime: 76.7 seconds
RetCode: 0
Status:  OK  
CheckDir: NTW.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf NTW.buildbin-libdir NTW.Rcheck && mkdir NTW.buildbin-libdir NTW.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=NTW.buildbin-libdir NTW_1.19.0.tar.gz >NTW.Rcheck\00install.out 2>&1 && cp NTW.Rcheck\00install.out NTW-install.out  && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=NTW.buildbin-libdir --install="check:NTW-install.out" --force-multiarch --no-vignettes --timings NTW_1.19.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.2-bioc/meat/NTW.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'NTW/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'NTW' version '1.19.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'NTW' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [17s] OK
Examples with CPU or elapsed time > 5s
     user system elapsed
NTW 13.67   0.01   13.68
** running examples for arch 'x64' ... [25s] OK
Examples with CPU or elapsed time > 5s
     user system elapsed
NTW 19.94   0.02   19.95
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

NTW.Rcheck/00install.out:


install for i386

* installing *source* package 'NTW' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'NTW' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'NTW' as NTW_1.19.0.zip
* DONE (NTW)

NTW.Rcheck/examples_i386/NTW-Ex.timings:

nameusersystemelapsed
A.estimation.Srow0.300.000.29
AP.estimation.Srow2.770.002.78
NTW13.67 0.0113.68
P.preestimation000
comb.matrix0.010.000.01
sos.data0.020.000.02

NTW.Rcheck/examples_x64/NTW-Ex.timings:

nameusersystemelapsed
A.estimation.Srow0.440.010.45
AP.estimation.Srow3.600.003.61
NTW19.94 0.0219.95
P.preestimation0.010.000.01
comb.matrix000
sos.data000