MLInterfaces 1.49.10
V. Carey
| Snapshot Date: 2015-08-19 16:24:33 -0700 (Wed, 19 Aug 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MLInterfaces | | Last Changed Rev: 106877 / Revision: 107602 | | Last Changed Date: 2015-07-29 07:13:24 -0700 (Wed, 29 Jul 2015) |
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | TIMEOUT | | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | [ TIMEOUT ] | OK | |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | TIMEOUT | OK | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | TIMEOUT | OK | |
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### Running command:
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### rm -rf MLInterfaces.buildbin-libdir MLInterfaces.Rcheck && mkdir MLInterfaces.buildbin-libdir MLInterfaces.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MLInterfaces.buildbin-libdir MLInterfaces_1.49.10.tar.gz >MLInterfaces.Rcheck\00install.out 2>&1 && cp MLInterfaces.Rcheck\00install.out MLInterfaces-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=MLInterfaces.buildbin-libdir --install="check:MLInterfaces-install.out" --force-multiarch --no-vignettes --timings MLInterfaces_1.49.10.tar.gz
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* using log directory 'D:/biocbld/bbs-3.2-bioc/meat/MLInterfaces.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MLInterfaces/DESCRIPTION' ... OK
* this is package 'MLInterfaces' version '1.49.10'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MLInterfaces' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Unexported objects imported by ':::' calls:
'MASS:::predict.lda' 'ada:::predict.ada' 'e1071:::predict.svm'
'rpart:::predict.rpart' 'stats:::plot.hclust'
See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
hclustWidget : <anonymous>: no visible global function definition for
':='
hclustWidget : <anonymous>: no visible binding for global variable
'key'
* checking Rd files ... NOTE
prepare_Rd: plspinHcube.Rd:14-16: Dropping empty section \details
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Codoc mismatches from documentation object 'plspinHcube':
plspinHcube
Code: function(insbwidth = 4)
Docs: function()
Argument names in code not in docs:
insbwidth
Codoc mismatches from documentation object 'projectLearnerToGrid':
projectLearnerToGrid
Code: function(formula, data, learnerSchema, trainInds, ...,
dropIntercept = TRUE, ngpts = 20, predExtras = list(),
predWrapper = force)
Docs: function(fmla, data, learnerSchema, trainInds, ...,
dropIntercept = TRUE, ngpts = 20, predExtras = list(),
predWrapper = force)
Argument names in code not in docs:
formula
Argument names in docs not in code:
fmla
Mismatches in argument names:
Position: 1 Code: formula Docs: fmla
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ...
install for i386
* installing *source* package 'MLInterfaces' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'MLInterfaces' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MLInterfaces' as MLInterfaces_1.49.10.zip
* DONE (MLInterfaces)