MEIGOR 1.3.0
Jose Egea
| Snapshot Date: 2015-08-23 16:24:14 -0700 (Sun, 23 Aug 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MEIGOR | | Last Changed Rev: 102594 / Revision: 107696 | | Last Changed Date: 2015-04-16 13:02:44 -0700 (Thu, 16 Apr 2015) |
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | [ OK ] | |  |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | OK | OK | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK | |
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### Running command:
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### /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings MEIGOR_1.3.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.2-bioc/meat/MEIGOR.Rcheck’
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MEIGOR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MEIGOR’ version ‘1.3.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MEIGOR’ can be installed ... [4s/4s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
initialize: possible error in runif(seed = options$seed): unused
argument (seed = options$seed)
initialize_and_pool: no visible binding for global variable ‘mulichain’
nls_fobj: no visible binding for global variable ‘fobj_global’
nls_fobj: no visible binding for '<<-' assignment to ‘n_fun_eval’
nls_fobj: no visible binding for global variable ‘n_fun_eval’
optim_fobj: no visible binding for global variable ‘fobj_global’
optim_fobj: no visible binding for '<<-' assignment to ‘n_fun_eval’
optim_fobj: no visible binding for global variable ‘n_fun_eval’
runBayesFit : prior: no visible binding for global variable
‘prior_mean’
runBayesFit : prior: no visible binding for global variable ‘prior_var’
solnp_eq: no visible binding for global variable ‘fobj_global’
solnp_eq: no visible binding for '<<-' assignment to ‘n_fun_eval’
solnp_eq: no visible binding for global variable ‘n_fun_eval’
solnp_eq: no visible binding for global variable ‘neq_global’
solnp_fobj: no visible binding for global variable ‘fobj_global’
solnp_fobj: no visible binding for '<<-' assignment to ‘n_fun_eval’
solnp_fobj: no visible binding for global variable ‘n_fun_eval’
solnp_ineq: no visible binding for global variable ‘fobj_global’
solnp_ineq: no visible binding for '<<-' assignment to ‘n_fun_eval’
solnp_ineq: no visible binding for global variable ‘n_fun_eval’
solnp_ineq: no visible binding for global variable ‘neq_global’
solnp_ineq: no visible binding for global variable ‘nconst_global’
ssm_localsolver: no visible binding for '<<-' assignment to
‘n_fun_eval’
ssm_localsolver: no visible binding for '<<-' assignment to
‘fobj_global’
ssm_localsolver: no visible binding for '<<-' assignment to
‘neq_global’
ssm_localsolver: no visible binding for '<<-' assignment to
‘nconst_global’
ssm_localsolver: no visible binding for '<<-' assignment to
‘extra_args’
ssm_localsolver: no visible binding for global variable ‘n_fun_eval’
ssm_localsolver: no visible binding for global variable ‘extra_args’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [30s/50s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
essR 9.413 0.032 9.459
runBayesFit 9.121 0.007 9.174
cur_params 8.989 0.016 9.012
CeVNSR 0.342 0.022 12.260
CeSSR 0.072 0.017 8.133
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.2-bioc/meat/MEIGOR.Rcheck/00check.log’
for details.