BioC 3.2: CHECK report for FGNet on perceval

Package: FGNet

Version: 3.4.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings FGNet_3.4.0.tar.gz

StartedAt: 2015-10-27 07:44:11 -0400 (Tue, 27 Oct 2015)

EndedAt: 2015-10-27 07:46:27 -0400 (Tue, 27 Oct 2015)

EllapsedTime: 136.6 seconds

RetCode: 0

Status:  OK

CheckDir: FGNet.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings FGNet_3.4.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.2-bioc/meat/FGNet.Rcheck’
* using R version 3.2.2 Patched (2015-10-08 r69496)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘FGNet/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘FGNet’ version ‘3.4.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘FGNet’ can be installed ... [3s/3s] OK
* checking installed package size ... NOTE
  installed size is  8.3Mb
  sub-directories of 1Mb or more:
    doc   7.9Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
actDeactGenes: no visible global function definition for
  ‘gtkWidgetSetSensitive’
buildGeneSets: no visible global function definition for ‘columns’
buildGeneSets: no visible global function definition for ‘keys’
buildGeneSets: no visible global function definition for ‘select’
buildGeneSets: no visible binding for global variable ‘GO.db’
buildGeneSets: no visible binding for global variable ‘KEGGPATHID2NAME’
buildGeneSets: no visible binding for global variable
  ‘reactomePATHID2EXTID’
buildGeneSets: no visible binding for global variable
  ‘reactomeEXTID2PATHID’
buildGeneSets: no visible binding for global variable
  ‘reactomePATHID2NAME’
fea_david: no visible binding for global variable ‘DAVIDWebService’
fea_david: no visible global function definition for ‘addList’
fea_david : <anonymous>: no visible global function definition for
  ‘getIdTypes’
fea_david: no visible global function definition for
  ‘setAnnotationCategories’
fea_david : <anonymous>: no visible global function definition for
  ‘getAllAnnotationCategoryNames’
fea_david: no visible global function definition for
  ‘getClusterReportFile’
fea_david: no visible global function definition for ‘getCurlHandle’
fea_david: no visible global function definition for ‘postForm’
fea_gage: no visible global function definition for ‘exprs’
fea_gage: no visible global function definition for ‘gage’
fea_gage: no visible global function definition for ‘esset.grp’
fea_gtLinker_getResults: no visible global function definition for
  ‘url.exists’
fea_topGO: no visible global function definition for ‘groupGOTerms’
fea_topGO: no visible binding for global variable ‘GOFisherTest’
fea_topGO: no visible binding for global variable ‘annFUN.gene2GO’
fea_topGO: no visible global function definition for ‘getSigGroups’
fea_topGO: no visible global function definition for ‘GenTable’
fea_topGO : <anonymous>: no visible global function definition for
  ‘genesInTerm’
fea_topGO : <anonymous>: no visible global function definition for
  ‘sigGenes’
FGNet_GUI: no visible global function definition for ‘gtkWindowNew’
FGNet_GUI: no visible global function definition for ‘gtkStatusbar’
FGNet_GUI: no visible global function definition for ‘gtkNotebookNew’
FGNet_GUI: no visible global function definition for
  ‘gtkNotebookInsertPage’
FGNet_GUI: no visible global function definition for ‘gtkLabelNew’
FGNet_GUI: no visible global function definition for ‘gtkVBoxNew’
FGNet_GUI: no visible global function definition for ‘gSignalConnect’
fillCombosColumns : <anonymous>: no visible global function definition
  for ‘gtkComboBoxAppendText’
format_david: no visible global function definition for ‘getURL’
formatResultsFile: no visible binding for global variable ‘rawResults’
generateNetwork: no visible global function definition for
  ‘gtkDialogNewWithButtons’
generateNetwork: no visible binding for global variable
  ‘GtkResponseType’
generateNetwork: no visible global function definition for ‘gtkLabel’
generateReport: no visible global function definition for
  ‘gtkDialogNewWithButtons’
generateReport: no visible binding for global variable
  ‘GtkResponseType’
generateReport: no visible global function definition for ‘gtkLabel’
goTreeLinks: no visible binding for global variable ‘GOBPPARENTS’
goTreeLinks: no visible binding for global variable ‘GOMFPARENTS’
goTreeLinks: no visible binding for global variable ‘GOCCPARENTS’
loadEset: no visible global function definition for ‘gtkCheckButton’
loadFileDialog: no visible global function definition for
  ‘gtkFileChooserDialog’
loadFileDialog: no visible binding for global variable
  ‘GtkResponseType’
loadFileDialog: no visible global function definition for
  ‘gtkTextBufferNew’
loadFileDialog: no visible global function definition for
  ‘gtkTextBufferSetText’
loadFileDialog: no visible global function definition for
  ‘gtkTextViewSetBuffer’
loadInstPkg: no visible global function definition for
  ‘gtkDialogNewWithButtons’
loadInstPkg: no visible binding for global variable ‘GtkResponseType’
loadInstPkg: no visible global function definition for ‘gtkLabel’
loadInstPkg: no visible global function definition for ‘biocLite’
plotGoAncestors: no visible binding for global variable ‘GOBPPARENTS’
plotGoAncestors: no visible binding for global variable ‘GOMFPARENTS’
plotGoAncestors: no visible binding for global variable ‘GOCCPARENTS’
plotGoAncestors : <anonymous>: no visible binding for global variable
  ‘GOTERM’
plotKegg: no visible global function definition for ‘columns’
plotKegg: no visible global function definition for ‘keys’
plotKegg: no visible global function definition for ‘select’
plotKegg: no visible binding for global variable ‘KEGGPATHID2NAME’
plotKegg: no visible global function definition for ‘download_KEGGfile’
plotKegg: no visible global function definition for ‘parse_XMLfile’
plotKegg: no visible global function definition for ‘plot_profile’
processExpressionField: no visible global function definition for
  ‘gtkTextViewGetBuffer’
processExpressionField: no visible global function definition for
  ‘gtkTextBufferGetText’
processExpressionField: no visible global function definition for
  ‘gtkTextBufferGetStartIter’
processExpressionField: no visible global function definition for
  ‘gtkTextBufferGetEndIter’
processFile: no visible binding for '<<-' assignment to ‘rawResults’
processFile: no visible binding for global variable ‘rawResults’
processFile: no visible global function definition for
  ‘gtkWidgetSetSensitive’
processGenesField: no visible global function definition for
  ‘gtkTextViewGetBuffer’
processGenesField: no visible global function definition for
  ‘gtkTextBufferGetText’
processGenesField: no visible global function definition for
  ‘gtkTextBufferGetStartIter’
processGenesField: no visible global function definition for
  ‘gtkTextBufferGetEndIter’
readFEAresults: no visible global function definition for
  ‘gtkTextBufferNew’
readFEAresults: no visible global function definition for
  ‘gtkTextBufferSetText’
readFEAresults: no visible global function definition for
  ‘gtkTextViewSetBuffer’
readFEAresults: no visible global function definition for
  ‘gtkDialogNewWithButtons’
readFEAresults: no visible binding for global variable
  ‘GtkResponseType’
readFEAresults: no visible global function definition for ‘gtkLabel’
refList: no visible global function definition for ‘columns’
refList: no visible global function definition for ‘keys’
selectAPI: no visible global function definition for
  ‘gtkWidgetSetSensitive’
selectAPI: no visible global function definition for
  ‘gtkComboBoxAppendText’
selectAPI: no visible global function definition for ‘gtkCheckButton’
selectNetworkTool: no visible global function definition for
  ‘gtkWidgetSetSensitive’
selectNetworkType: no visible global function definition for
  ‘gtkWidgetSetSensitive’
selectWs: no visible global function definition for
  ‘gtkWidgetSetSensitive’
selectWs_fillFields: no visible binding for global variable
  ‘DAVIDWebService’
selectWs_fillFields: no visible global function definition for
  ‘getIdTypes’
selectWs_fillFields: no visible global function definition for
  ‘getAllAnnotationCategoryNames’
selectWs_fillFields: no visible global function definition for
  ‘gtkComboBoxAppendText’
selectWs_fillFields: no visible global function definition for
  ‘gtkCheckButton’
selectWs_fillFields: no visible global function definition for
  ‘gtkWidgetSetSensitive’
selectWs_fillFields: no visible global function definition for
  ‘gtkDialogNewWithButtons’
selectWs_fillFields: no visible binding for global variable
  ‘GtkResponseType’
selectWs_fillFields: no visible global function definition for
  ‘gtkLabel’
SOAPQuery: no visible global function definition for
  ‘basicTextGatherer’
SOAPQuery: no visible global function definition for ‘curlPerform’
SOAPQuery: no visible global function definition for ‘parseHTTPHeader’
submitQuery: no visible global function definition for
  ‘gtkNotebookGetCurrentPage’
submitQuery: no visible global function definition for
  ‘gtkDialogNewWithButtons’
submitQuery: no visible binding for global variable ‘GtkResponseType’
submitQuery: no visible global function definition for ‘gtkLabel’
submitQuery: no visible global function definition for
  ‘gtkWidgetGetSensitive’
submitQuery: no visible global function definition for ‘readList’
submitQuery: no visible global function definition for
  ‘gtkNotebookSetCurrentPage’
submitQuery: no visible global function definition for
  ‘gtkTextBufferNew’
submitQuery: no visible global function definition for
  ‘gtkTextBufferSetText’
submitQuery: no visible global function definition for
  ‘gtkTextViewSetBuffer’
tabDavid_fill: no visible global function definition for ‘gtkVBox’
tabDavid_fill: no visible global function definition for ‘gtkFrame’
tabDavid_fill: no visible global function definition for ‘gtkHBox’
tabDavid_fill: no visible global function definition for
  ‘gtkRadioButtonNewWithLabelFromWidget’
tabDavid_fill: no visible global function definition for
  ‘gtkRadioButton’
tabDavid_fill: no visible global function definition for
  ‘gtkLinkButtonNewWithLabel’
tabDavid_fill: no visible global function definition for
  ‘gtkFrameSetShadowType’
tabDavid_fill: no visible binding for global variable ‘GtkShadowType’
tabDavid_fill: no visible global function definition for
  ‘gtkWidgetSetSensitive’
tabDavid_fill: no visible global function definition for ‘gtkEntryNew’
tabDavid_fill: no visible global function definition for ‘gtkButton’
tabDavid_fill: no visible global function definition for
  ‘gtkComboBoxNewText’
tabDavid_fill: no visible global function definition for
  ‘gtkScrolledWindow’
tabDavid_fill: no visible global function definition for ‘gtkVBoxNew’
tabDavid_fill: no visible global function definition for
  ‘gtkViewportNew’
tabDavid_fill: no visible global function definition for
  ‘gSignalConnect’
tabFEA_fill: no visible global function definition for ‘gtkHBox’
tabFEA_fill: no visible global function definition for ‘gtkFrame’
tabFEA_fill: no visible global function definition for
  ‘gtkFrameSetShadowType’
tabFEA_fill: no visible binding for global variable ‘GtkShadowType’
tabFEA_fill: no visible global function definition for ‘gtkEntryNew’
tabFEA_fill: no visible global function definition for ‘gtkVBoxNew’
tabFEA_fill: no visible global function definition for ‘gtkFrameNew’
tabFEA_fill: no visible global function definition for ‘gtkVBox’
tabFEA_fill: no visible global function definition for
  ‘gtkScrolledWindow’
tabFEA_fill: no visible global function definition for
  ‘gtkTextViewNewWithBuffer’
tabFEA_fill: no visible global function definition for
  ‘pangoFontDescriptionFromString’
tabFEA_fill: no visible global function definition for
  ‘gtkTextBufferNew’
tabFEA_fill: no visible global function definition for
  ‘gtkTextBufferSetText’
tabFEA_fill: no visible global function definition for
  ‘gtkTextViewSetBuffer’
tabFEA_fill: no visible global function definition for ‘gtkButton’
tabFEA_fill: no visible global function definition for ‘gSignalConnect’
tabFEA_fill: no visible global function definition for ‘gtkViewportNew’
tabFEA_fill: no visible global function definition for ‘gtkNotebookNew’
tabFEA_fill: no visible binding for '<<-' assignment to ‘rawResults’
tabFEA_fill: no visible global function definition for
  ‘gtkNotebookInsertPage’
tabFEA_fill: no visible global function definition for ‘gtkLabelNew’
tabGage_fill: no visible global function definition for ‘gtkVBox’
tabGage_fill: no visible global function definition for ‘gtkFrame’
tabGage_fill: no visible global function definition for ‘gtkVBoxNew’
tabGage_fill: no visible global function definition for
  ‘gtkFrameSetShadowType’
tabGage_fill: no visible binding for global variable ‘GtkShadowType’
tabGage_fill: no visible global function definition for ‘gtkHBox’
tabGage_fill: no visible global function definition for
  ‘gtkRadioButtonNewWithLabelFromWidget’
tabGage_fill: no visible global function definition for
  ‘gtkRadioButton’
tabGage_fill: no visible global function definition for ‘gtkEntryNew’
tabGage_fill: no visible global function definition for ‘gtkButton’
tabGage_fill: no visible global function definition for ‘gtkHBoxNew’
tabGage_fill: no visible global function definition for
  ‘gtkComboBoxNewText’
tabGage_fill: no visible global function definition for
  ‘gtkComboBoxAppendText’
tabGage_fill: no visible global function definition for
  ‘gtkCheckButton’
tabGage_fill: no visible global function definition for
  ‘gSignalConnect’
tabGTL_fill: no visible global function definition for ‘gtkVBox’
tabGTL_fill: no visible global function definition for
  ‘gtkComboBoxNewText’
tabGTL_fill: no visible global function definition for
  ‘gtkComboBoxAppendText’
tabGTL_fill: no visible global function definition for
  ‘gtkComboBoxSetTitle’
tabGTL_fill: no visible global function definition for ‘gtkFrame’
tabGTL_fill: no visible global function definition for
  ‘gtkFrameSetShadowType’
tabGTL_fill: no visible binding for global variable ‘GtkShadowType’
tabGTL_fill: no visible global function definition for ‘gtkVBoxNew’
tabGTL_fill: no visible global function definition for ‘gtkCheckButton’
tabGTL_fill: no visible global function definition for ‘gtkEntryNew’
tabHelp_fill: no visible global function definition for ‘gtkHBox’
tabHelp_fill: no visible global function definition for ‘gtkVBox’
tabHelp_fill: no visible global function definition for ‘gtkLabel’
tabHelp_fill: no visible global function definition for ‘gtkFrame’
tabHelp_fill: no visible global function definition for
  ‘gtkFrameSetShadowType’
tabHelp_fill: no visible binding for global variable ‘GtkShadowType’
tabHelp_fill: no visible global function definition for ‘gtkEntryNew’
tabNetwork_common_fill: no visible global function definition for
  ‘gtkHBox’
tabNetwork_common_fill: no visible global function definition for
  ‘gtkTable’
tabNetwork_common_fill: no visible global function definition for
  ‘gtkFrame’
tabNetwork_common_fill: no visible global function definition for
  ‘gtkFrameSetShadowType’
tabNetwork_common_fill: no visible binding for global variable
  ‘GtkShadowType’
tabNetwork_common_fill: no visible global function definition for
  ‘gtkScrolledWindow’
tabNetwork_common_fill: no visible global function definition for
  ‘gtkTextViewNewWithBuffer’
tabNetwork_common_fill: no visible global function definition for
  ‘pangoFontDescriptionFromString’
tabNetwork_common_fill: no visible global function definition for
  ‘gtkTextBufferNew’
tabNetwork_common_fill: no visible global function definition for
  ‘gtkTextBufferSetText’
tabNetwork_common_fill: no visible global function definition for
  ‘gtkTextViewSetBuffer’
tabNetwork_common_fill: no visible global function definition for
  ‘gtkComboBoxNewText’
tabNetwork_common_fill: no visible global function definition for
  ‘gtkComboBoxAppendText’
tabNetwork_common_fill: no visible global function definition for
  ‘gtkComboBoxSetTitle’
tabNetwork_common_fill: no visible global function definition for
  ‘gtkFrameNew’
tabNetwork_common_fill: no visible global function definition for
  ‘gtkButton’
tabNetwork_common_fill: no visible global function definition for
  ‘gSignalConnect’
tabNetwork_common_fill: no visible global function definition for
  ‘gtkVBoxNew’
tabNetwork_common_fill: no visible global function definition for
  ‘gtkEntryNew’
tabNetwork_common_fill: no visible global function definition for
  ‘gtkExpander’
tabNetwork_common_fill: no visible global function definition for
  ‘gtkCheckButton’
tabNetwork_common_fill: no visible global function definition for
  ‘gtkWidgetSetSensitive’
tabNetwork_fill: no visible global function definition for
  ‘gtkNotebookNew’
tabNetwork_fill: no visible global function definition for
  ‘gtkNotebookInsertPage’
tabNetwork_fill: no visible global function definition for
  ‘gtkLabelNew’
tabNetwork_fill: no visible global function definition for
  ‘gSignalConnect’
tabOther_fill: no visible global function definition for ‘gtkVBox’
tabOther_fill: no visible global function definition for ‘gtkLabelNew’
tabOther_fill: no visible global function definition for ‘gtkExpander’
tabOther_fill: no visible global function definition for ‘gtkHBox’
tabOther_fill: no visible global function definition for
  ‘gtkCheckButton’
tabOther_fill: no visible global function definition for
  ‘gtkComboBoxNewText’
tabOther_fill: no visible global function definition for
  ‘gtkComboBoxAppendText’
tabOther_fill: no visible global function definition for ‘gtkFrame’
tabOther_fill: no visible global function definition for
  ‘gtkFrameSetShadowType’
tabOther_fill: no visible binding for global variable ‘GtkShadowType’
tabOther_fill: no visible global function definition for ‘gtkEntryNew’
tabOther_fill: no visible global function definition for ‘gtkButton’
tabOther_fill: no visible global function definition for
  ‘gSignalConnect’
tabOther_fill: no visible global function definition for
  ‘gtkWidgetSetSensitive’
tabOther_fill : <anonymous>: no visible global function definition for
  ‘gtkComboBoxNewText’
tabOther_fill : <anonymous>: no visible global function definition for
  ‘gtkFrame’
tabOther_fill : <anonymous>: no visible global function definition for
  ‘gtkFrameSetShadowType’
tabOther_fill : <anonymous>: no visible binding for global variable
  ‘GtkShadowType’
tabOther_fill : <anonymous>: no visible global function definition for
  ‘gtkHBox’
tabOther_fill: no visible global function definition for ‘gtkTable’
tabOther_fill: no visible global function definition for ‘gtkLabel’
tabPlotNetwork_fill: no visible global function definition for
  ‘gtkVBox’
tabPlotNetwork_fill: no visible global function definition for
  ‘gtkExpanderNew’
tabPlotNetwork_fill: no visible global function definition for
  ‘gtkHBox’
tabPlotNetwork_fill: no visible global function definition for
  ‘gtkFrame’
tabPlotNetwork_fill: no visible global function definition for
  ‘gtkFrameSetShadowType’
tabPlotNetwork_fill: no visible binding for global variable
  ‘GtkShadowType’
tabPlotNetwork_fill: no visible global function definition for
  ‘gtkComboBoxNewText’
tabPlotNetwork_fill: no visible global function definition for
  ‘gtkComboBoxAppendText’
tabPlotNetwork_fill: no visible global function definition for
  ‘gtkCheckButton’
tabPlotNetwork_fill: no visible global function definition for
  ‘gtkWidgetSetSensitive’
tabPlotNetwork_fill: no visible global function definition for
  ‘gtkEntryNew’
tabPlotNetwork_fill: no visible global function definition for
  ‘gtkButton’
tabPlotNetwork_fill: no visible global function definition for
  ‘gSignalConnect’
tabReport_fill: no visible global function definition for ‘gtkVBox’
tabReport_fill: no visible global function definition for ‘gtkFrame’
tabReport_fill: no visible global function definition for ‘gtkVBoxNew’
tabReport_fill: no visible global function definition for
  ‘gtkCheckButton’
tabReport_fill: no visible global function definition for ‘gtkButton’
tabReport_fill: no visible global function definition for
  ‘gSignalConnect’
tabSubNetwork_fill: no visible global function definition for ‘gtkVBox’
tabSubNetwork_fill: no visible global function definition for ‘gtkHBox’
tabSubNetwork_fill: no visible global function definition for
  ‘gtkFrame’
tabSubNetwork_fill: no visible global function definition for
  ‘gtkFrameSetShadowType’
tabSubNetwork_fill: no visible binding for global variable
  ‘GtkShadowType’
tabSubNetwork_fill: no visible global function definition for
  ‘gtkEntryNew’
tabSubNetwork_fill: no visible global function definition for
  ‘gtkComboBoxNewText’
tabSubNetwork_fill: no visible global function definition for
  ‘gtkCheckButton’
tabSubNetwork_fill: no visible global function definition for
  ‘gtkFrameNew’
tabSubNetwork_fill: no visible global function definition for
  ‘gtkButton’
tabSubNetwork_fill: no visible global function definition for
  ‘gtkTable’
tabSubNetwork_fill: no visible global function definition for
  ‘gtkLabel’
tabTopGo_fill: no visible global function definition for ‘gtkVBox’
tabTopGo_fill: no visible global function definition for ‘gtkHBoxNew’
tabTopGo_fill: no visible global function definition for ‘gtkFrame’
tabTopGo_fill: no visible global function definition for
  ‘gtkFrameSetShadowType’
tabTopGo_fill: no visible binding for global variable ‘GtkShadowType’
tabTopGo_fill: no visible global function definition for
  ‘gtkComboBoxNewText’
tabTopGo_fill: no visible global function definition for
  ‘gtkComboBoxAppendText’
tabTopGo_fill: no visible global function definition for ‘gtkVBoxNew’
tabTopGo_fill: no visible global function definition for
  ‘gtkCheckButton’
tabTopGo_fill: no visible global function definition for
  ‘gtkScrolledWindow’
tabTopGo_fill: no visible global function definition for
  ‘gtkViewportNew’
tabTopGo_fill: no visible global function definition for ‘gtkEntryNew’
tabTopGo_fill: no visible global function definition for
  ‘gtkLinkButtonNewWithLabel’
viewFile: no visible binding for global variable ‘rawResults’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [35s/77s] OK
Examples with CPU or elapsed time > 5s
                   user system elapsed
plotGoAncestors   7.341  0.513   7.947
plotKegg          6.113  0.430   9.450
fea_david         5.563  0.448   5.970
functionalNetwork 3.653  0.382   8.237
fea2incidMat      2.502  0.247   7.348
analyzeNetwork    1.245  0.194  10.326
fea_gtLinker      0.688  0.092   7.593
getTerms          0.331  0.080   5.547
clustersDistance  0.212  0.015   5.463
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘runTests.R’ [2s/7s]
 [3s/7s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.2-bioc/meat/FGNet.Rcheck/00check.log’
for details.

* installing *source* package ‘FGNet’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (FGNet)

name	user	system	elapsed
FGNet-package	0.002	0.000	0.002
FGNet_GUI	0.001	0.000	0.001
FGNet_report	0.003	0.001	0.003
analyzeNetwork	1.245	0.194	10.326
clustersDistance	0.212	0.015	5.463
fea2incidMat	2.502	0.247	7.348
fea_david	5.563	0.448	5.970
fea_gage	0.002	0.000	0.003
fea_gtLinker	0.688	0.092	7.593
fea_topGO	0.001	0.000	0.001
format_david	2.575	0.305	3.372
format_results	0.000	0.000	0.001
functionalNetwork	3.653	0.382	8.237
getTerms	0.331	0.080	5.547
keywordsTerm	0.259	0.052	3.942
plotGoAncestors	7.341	0.513	7.947
plotKegg	6.113	0.430	9.450