EnrichmentBrowser 1.99.8
Ludwig Geistlinger
| Snapshot Date: 2015-08-23 16:24:14 -0700 (Sun, 23 Aug 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/EnrichmentBrowser | | Last Changed Rev: 107554 / Revision: 107696 | | Last Changed Date: 2015-08-18 12:04:03 -0700 (Tue, 18 Aug 2015) |
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | [ ERROR ] | skipped | | |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | ERROR | skipped | skipped | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | ERROR | skipped | skipped | |
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### Running command:
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### /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data EnrichmentBrowser
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* checking for file ‘EnrichmentBrowser/DESCRIPTION’ ... OK
* preparing ‘EnrichmentBrowser’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport,
clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply,
parSapply, parSapplyLB
The following objects are masked from ‘package:stats’:
IQR, mad, xtabs
The following objects are masked from ‘package:base’:
Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame,
as.vector, cbind, colnames, do.call, duplicated, eval, evalq, get, grep,
grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste,
pmax, pmax.int, pmin, pmin.int, rank, rbind, rep.int, rownames, sapply,
setdiff, sort, table, tapply, union, unique, unlist, unsplit
Welcome to Bioconductor
Vignettes contain introductory material; view with 'browseVignettes()'. To
cite Bioconductor, see 'citation("Biobase")', and for packages
'citation("pkgname")'.
Loading required package: GSEABase
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: IRanges
Loading required package: S4Vectors
Loading required package: XML
Loading required package: graph
Attaching package: ‘graph’
The following object is masked from ‘package:XML’:
addNode
Loading required package: pathview
Loading required package: KEGGgraph
Attaching package: ‘KEGGgraph’
The following object is masked from ‘package:graphics’:
plot
Loading required package: org.Hs.eg.db
Loading required package: DBI
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Pathview is an open source software package distributed under GNU General
Public License version 3 (GPLv3). Details of GPLv3 is available at
http://www.gnu.org/licenses/gpl-3.0.html.
The pathview downloads and uses KEGG data. Academic users may freely use the
KEGG website at http://www.kegg.jp/ or its mirror site at GenomeNet
http://www.genome.jp/kegg/. Academic users may also freely link to the KEGG
website. Non-academic users may use the KEGG website as end users for
non-commercial purposes, but any other use requires a license agreement
(details at http://www.kegg.jp/kegg/legal.html).
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Attaching package: ‘EnrichmentBrowser’
The following object is masked from ‘package:BiocGenerics’:
normalize
Loading required package: hgu95av2.db
Error: processing vignette 'EnrichmentBrowser.Rnw' failed with diagnostics:
chunk 7 (label = probe2gene)
Error in if (!kegg.uses.entrez) { : argument is of length zero
Execution halted