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BioC 3.2: BUILD BIN report for DirichletMultinomial on oaxaca

This page was generated on 2015-10-27 17:40:03 -0400 (Tue, 27 Oct 2015).

Package 279/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DirichletMultinomial 1.12.0
Martin Morgan
Snapshot Date: 2015-10-26 19:24:07 -0400 (Mon, 26 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/DirichletMultinomial
Last Changed Rev: 109589 / Revision: 109947
Last Changed Date: 2015-10-13 15:36:05 -0400 (Tue, 13 Oct 2015)
linux1.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
windows1.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: DirichletMultinomial
Version: 1.12.0
Command: rm -rf DirichletMultinomial.buildbin-libdir && mkdir DirichletMultinomial.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh DirichletMultinomial_1.12.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R DirichletMultinomial.buildbin-libdir
StartedAt: 2015-10-27 09:45:32 -0400 (Tue, 27 Oct 2015)
EndedAt: 2015-10-27 09:46:11 -0400 (Tue, 27 Oct 2015)
EllapsedTime: 38.4 seconds
RetCode: 0
Status:  OK 
PackageFile: DirichletMultinomial_1.12.0.tgz
PackageFileSize: 677 KiB

Command output

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###
### Running command:
###
###   rm -rf DirichletMultinomial.buildbin-libdir && mkdir DirichletMultinomial.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh DirichletMultinomial_1.12.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R DirichletMultinomial.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=DirichletMultinomial.buildbin-libdir DirichletMultinomial_1.12.0.tar.gz'
>>>>>>> 

* installing *source* package ‘DirichletMultinomial’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   `gsl-config --cflags` -DR_DIRICHLETMULTINOMIAL -fPIC  -Wall -mtune=core2 -g -O2  -c R_init_DirichletMultinomial.c -o R_init_DirichletMultinomial.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   `gsl-config --cflags` -DR_DIRICHLETMULTINOMIAL -fPIC  -Wall -mtune=core2 -g -O2  -c dirichlet_fit.c -o dirichlet_fit.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   `gsl-config --cflags` -DR_DIRICHLETMULTINOMIAL -fPIC  -Wall -mtune=core2 -g -O2  -c dirichlet_fit_main.c -o dirichlet_fit_main.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o DirichletMultinomial.so R_init_DirichletMultinomial.o dirichlet_fit.o dirichlet_fit_main.o -L/usr/local/lib -lgsl -lgslcblas -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.2-bioc/meat/DirichletMultinomial.buildbin-libdir/DirichletMultinomial/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DirichletMultinomial)


>>>>>>> 
>>>>>>> FIXING LINKS FOR DirichletMultinomial.buildbin-libdir/DirichletMultinomial/libs//DirichletMultinomial.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgcc_s.1.dylib" "DirichletMultinomial.buildbin-libdir/DirichletMultinomial/libs//DirichletMultinomial.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgfortran.3.dylib" "DirichletMultinomial.buildbin-libdir/DirichletMultinomial/libs//DirichletMultinomial.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.5.2.dylib" "DirichletMultinomial.buildbin-libdir/DirichletMultinomial/libs//DirichletMultinomial.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.dylib" "DirichletMultinomial.buildbin-libdir/DirichletMultinomial/libs//DirichletMultinomial.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libquadmath.0.dylib" "DirichletMultinomial.buildbin-libdir/DirichletMultinomial/libs//DirichletMultinomial.so"