BAGS 2.10.0
Alejandro Quiroz-Zarate
| Snapshot Date: 2015-10-26 19:24:07 -0400 (Mon, 26 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/BAGS | | Last Changed Rev: 109589 / Revision: 109947 | | Last Changed Date: 2015-10-13 15:36:05 -0400 (Tue, 13 Oct 2015) |
| linux1.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| windows1.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | OK | OK | |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | [ OK ] | OK | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK | |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings BAGS_2.10.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.2-bioc/meat/BAGS.Rcheck’
* using R version 3.2.2 Patched (2015-10-08 r69496)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘BAGS/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘BAGS’ version ‘2.10.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘BAGS’ can be installed ... [3s/3s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: ‘Biobase’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [155s/155s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
Gibbs2 93.034 19.286 112.327
MCMCDataSet 20.439 1.236 21.675
DataGeneSets 18.759 1.322 20.165
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/Users/biocbuild/bbs-3.2-bioc/meat/BAGS.Rcheck/00check.log’
for details.
* installing *source* package ‘BAGS’ ...
** libs
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=core2 -g -O2 -Wall -c BAGS.c -o BAGS.o
In file included from BAGS.c:8:
FuncionesFast-Final.h: In function ‘BetaFunCSDiff2’:
FuncionesFast-Final.h:145: warning: unused variable ‘YMu1’
FuncionesFast-Final.h: In function ‘AlfaFunCS’:
FuncionesFast-Final.h:166: warning: unused variable ‘MediaDiff’
FuncionesFast-Final.h:166: warning: unused variable ‘A’
FuncionesFast-Final.h:166: warning: unused variable ‘C’
BAGS.c: In function ‘Gibbs5’:
BAGS.c:25: warning: unused variable ‘resI’
BAGS.c:25: warning: unused variable ‘rate’
BAGS.c:25: warning: unused variable ‘escala’
BAGS.c:25: warning: unused variable ‘escala3’
BAGS.c:25: warning: unused variable ‘escala2’
BAGS.c:25: warning: unused variable ‘escala1’
BAGS.c:24: warning: unused variable ‘formaAux’
BAGS.c: In function ‘Gibbs4’:
BAGS.c:342: warning: unused variable ‘resI’
BAGS.c:342: warning: unused variable ‘rate’
BAGS.c:342: warning: unused variable ‘escala’
BAGS.c:342: warning: unused variable ‘escala3’
BAGS.c:342: warning: unused variable ‘escala2’
BAGS.c:342: warning: unused variable ‘escala1’
BAGS.c:341: warning: unused variable ‘formaAux’
BAGS.c: In function ‘Gibbs3’:
BAGS.c:593: warning: unused variable ‘resI’
BAGS.c:593: warning: unused variable ‘rate’
BAGS.c:593: warning: unused variable ‘escala’
BAGS.c:593: warning: unused variable ‘escala3’
BAGS.c:593: warning: unused variable ‘escala2’
BAGS.c:593: warning: unused variable ‘escala1’
BAGS.c:592: warning: unused variable ‘formaAux’
BAGS.c: In function ‘Gibbs2’:
BAGS.c:786: warning: unused variable ‘resI’
BAGS.c:786: warning: unused variable ‘rate’
BAGS.c:786: warning: unused variable ‘escala’
BAGS.c:786: warning: unused variable ‘escala3’
BAGS.c:786: warning: unused variable ‘escala2’
BAGS.c:786: warning: unused variable ‘escala1’
BAGS.c:785: warning: unused variable ‘formaAux’
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -L/usr/local/lib -o BAGS.so BAGS.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.2-bioc/meat/BAGS.Rcheck/BAGS/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (BAGS)