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BioC 3.2: BUILD report for bioassayR on perceval

This page was generated on 2015-08-24 10:53:28 -0700 (Mon, 24 Aug 2015).

Package 91/1071HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
bioassayR 1.7.7
Tyler Backman
Snapshot Date: 2015-08-23 16:24:14 -0700 (Sun, 23 Aug 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/bioassayR
Last Changed Rev: 105551 / Revision: 107696
Last Changed Date: 2015-06-26 13:16:26 -0700 (Fri, 26 Jun 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded [ ERROR ] skipped  skipped 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: bioassayR
Version: 1.7.7
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data bioassayR
StartedAt: 2015-08-23 20:00:25 -0700 (Sun, 23 Aug 2015)
EndedAt: 2015-08-23 20:00:52 -0700 (Sun, 23 Aug 2015)
EllapsedTime: 26.8 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data bioassayR
###
##############################################################################
##############################################################################


* checking for file ‘bioassayR/DESCRIPTION’ ... OK
* preparing ‘bioassayR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: DBI
Loading required package: RSQLite
Loading required package: Matrix
Loading required package: rjson
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport,
    clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply,
    parSapply, parSapplyLB

The following object is masked from ‘package:Matrix’:

    as.vector

The following objects are masked from ‘package:stats’:

    IQR, mad, xtabs

The following objects are masked from ‘package:base’:

    anyDuplicated, append, as.data.frame, as.vector, cbind, colnames, do.call,
    duplicated, eval, evalq, Filter, Find, get, grep, grepl, intersect,
    is.unsorted, lapply, Map, mapply, match, mget, order, paste, pmax, pmax.int,
    pmin, pmin.int, Position, rank, rbind, Reduce, rep.int, rownames, sapply,
    setdiff, sort, table, tapply, union, unique, unlist, unsplit

Creating index: note this may take a long time for a large database
Creating index: note this may take a long time for a large database

Error: processing vignette 'bioassayR.Rnw' failed with diagnostics:
 chunk 36 
Error in function (type, msg, asError = TRUE)  : 
  Failure when receiving data from the peer
Execution halted