R. Gentleman
| Snapshot Date: 2024-10-17 07:30 -0400 (Thu, 17 Oct 2024) |
| git_url: https://git.bioconductor.org/packages/yeastGSData |
| git_branch: RELEASE_3_19 |
| git_last_commit: b8c8c9a |
| git_last_commit_date: 2024-04-30 10:28:34 -0400 (Tue, 30 Apr 2024) |
| Back to Build/check report for BioC 3.19 experimental data |
|
This page was generated on 2024-10-17 14:51 -0400 (Thu, 17 Oct 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4763 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 427/430 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| yeastGSData 0.42.0 (landing page) R. Gentleman
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | | |||||||
|
To the developers/maintainers of the yeastGSData package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: yeastGSData |
| Version: 0.42.0 |
| Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:yeastGSData.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings yeastGSData_0.42.0.tar.gz |
| StartedAt: 2024-10-17 12:24:00 -0400 (Thu, 17 Oct 2024) |
| EndedAt: 2024-10-17 12:25:36 -0400 (Thu, 17 Oct 2024) |
| EllapsedTime: 96.3 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: yeastGSData.Rcheck |
| Warnings: 1 |
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###
### Running command:
###
### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:yeastGSData.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings yeastGSData_0.42.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.19-data-experiment/meat/yeastGSData.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.5 LTS
* using session charset: UTF-8
* checking for file ‘yeastGSData/DESCRIPTION’ ... OK
* this is package ‘yeastGSData’ version ‘0.42.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘yeastGSData’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 17.3Mb
sub-directories of 1Mb or more:
extdata 16.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... NOTE
prepare_Rd: BayesFactorNGS.Rd:24-25: Dropping empty section \source
prepare_Rd: BayesFactorNGS.Rd:26-27: Dropping empty section \references
prepare_Rd: BayesFactorPGS.Rd:24-25: Dropping empty section \source
prepare_Rd: BayesFactorPGS.Rd:26-27: Dropping empty section \references
checkRd: (-1) Mpact.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Mpact.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Mpact.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Mpact.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Mpact.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Mpact.Rd:19: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
Note: significantly better compression could be obtained
by using R CMD build --resave-data
old_size new_size compress
BayesFactorNGS.rda 46Kb 18Kb xz
BayesFactorPGS.rda 70Kb 32Kb xz
MIPSGS.rda 15Kb 9Kb xz
Mpact.rda 199Kb 136Kb bzip2
NEGGS.rda 600Kb 40Kb xz
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 3 NOTEs
See
‘/home/biocbuild/bbs-3.19-data-experiment/meat/yeastGSData.Rcheck/00check.log’
for details.
yeastGSData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL yeastGSData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’ * installing *source* package ‘yeastGSData’ ... ** using staged installation ** data ** inst ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (yeastGSData)
yeastGSData.Rcheck/yeastGSData-Ex.timings
| name | user | system | elapsed | |
| BayesFactorNGS | 0.015 | 0.004 | 0.019 | |
| BayesFactorPGS | 0.006 | 0.000 | 0.006 | |
| BinaryGS | 0.002 | 0.000 | 0.002 | |
| MIPSGS | 0.007 | 0.004 | 0.012 | |
| Mpact | 0.042 | 0.000 | 0.041 | |
| MpactEvidenceCodes | 0.001 | 0.000 | 0.001 | |
| NEGGS | 3.501 | 0.128 | 3.630 | |
| POSPS | 0.002 | 0.000 | 0.002 | |
| PRS | 0.000 | 0.000 | 0.001 | |