| Back to Build/check report for BioC 3.19 experimental data | 
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This page was generated on 2024-10-17 14:51 -0400 (Thu, 17 Oct 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs | 
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4763 | 
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 118/430 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| ewceData 1.12.0  (landing page) Alan Murphy 
 | nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK |  | |||||||
| To the developers/maintainers of the ewceData package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. | 
| Package: ewceData | 
| Version: 1.12.0 | 
| Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:ewceData.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings ewceData_1.12.0.tar.gz | 
| StartedAt: 2024-10-17 11:22:05 -0400 (Thu, 17 Oct 2024) | 
| EndedAt: 2024-10-17 11:24:36 -0400 (Thu, 17 Oct 2024) | 
| EllapsedTime: 151.8 seconds | 
| RetCode: 0 | 
| Status: OK | 
| CheckDir: ewceData.Rcheck | 
| Warnings: 0 | 
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### Running command:
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###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:ewceData.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings ewceData_1.12.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.19-data-experiment/meat/ewceData.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.5 LTS
* using session charset: UTF-8
* checking for file ‘ewceData/DESCRIPTION’ ... OK
* this is package ‘ewceData’ version ‘1.12.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ewceData’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
ewceData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL ewceData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’ * installing *source* package ‘ewceData’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ewceData)
ewceData.Rcheck/ewceData-Ex.timings
| name | user | system | elapsed | |
| all_hgnc | 1.808 | 0.168 | 2.343 | |
| all_hgnc_wtEnsembl | 0.802 | 0.112 | 1.000 | |
| all_mgi | 0.750 | 0.084 | 0.911 | |
| all_mgi_wtEnsembl | 0.749 | 0.096 | 0.923 | |
| alzh_gwas_top100 | 0.001 | 0.000 | 0.000 | |
| cortex_mrna | 2.735 | 0.276 | 3.100 | |
| ctd | 3.100 | 0.160 | 3.338 | |
| ensembl_transcript_lengths_GCcontent | 0.976 | 0.147 | 1.201 | |
| ewceData-Package | 0.992 | 0.200 | 1.267 | |
| example_genelist | 0.656 | 0.064 | 0.799 | |
| hpsd_genes | 0.681 | 0.052 | 0.814 | |
| hypothalamus_mrna | 0.984 | 0.124 | 1.184 | |
| id_genes | 0.674 | 0.080 | 0.833 | |
| mgi_synonym_data | 1.069 | 0.124 | 1.269 | |
| mouse_to_human_homologs | 0.753 | 0.088 | 0.919 | |
| rbfox_genes | 0.712 | 0.068 | 0.856 | |
| schiz_genes | 0.715 | 0.080 | 0.872 | |
| tt_alzh | 1.031 | 0.724 | 1.834 | |
| tt_alzh_BA36 | 0.752 | 0.104 | 0.933 | |
| tt_alzh_BA44 | 0.745 | 0.068 | 0.891 | |