| Back to Build/check report for BioC 3.19 experimental data | 
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This page was generated on 2024-10-17 14:51 -0400 (Thu, 17 Oct 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs | 
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4763 | 
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 62/430 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| clustifyrdatahub 1.14.0  (landing page) Kent Riemondy 
 | nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK |  | |||||||
| To the developers/maintainers of the clustifyrdatahub package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. | 
| Package: clustifyrdatahub | 
| Version: 1.14.0 | 
| Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:clustifyrdatahub.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings clustifyrdatahub_1.14.0.tar.gz | 
| StartedAt: 2024-10-17 11:09:13 -0400 (Thu, 17 Oct 2024) | 
| EndedAt: 2024-10-17 11:11:15 -0400 (Thu, 17 Oct 2024) | 
| EllapsedTime: 121.8 seconds | 
| RetCode: 0 | 
| Status: OK | 
| CheckDir: clustifyrdatahub.Rcheck | 
| Warnings: 0 | 
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### Running command:
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###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:clustifyrdatahub.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings clustifyrdatahub_1.14.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.19-data-experiment/meat/clustifyrdatahub.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.5 LTS
* using session charset: UTF-8
* checking for file ‘clustifyrdatahub/DESCRIPTION’ ... OK
* this is package ‘clustifyrdatahub’ version ‘1.14.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘clustifyrdatahub’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.19-data-experiment/meat/clustifyrdatahub.Rcheck/00check.log’
for details.
clustifyrdatahub.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL clustifyrdatahub ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’ * installing *source* package ‘clustifyrdatahub’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (clustifyrdatahub)
clustifyrdatahub.Rcheck/clustifyrdatahub-Ex.timings
| name | user | system | elapsed | |
| ref_MCA | 0.750 | 0.063 | 1.271 | |
| ref_cortex_dev | 0.077 | 0.024 | 0.101 | |
| ref_hema_microarray | 0.088 | 0.012 | 0.100 | |
| ref_immgen | 0.079 | 0.020 | 0.099 | |
| ref_moca_main | 0.193 | 0.052 | 0.245 | |
| ref_mouse.rnaseq | 0.079 | 0.024 | 0.103 | |
| ref_mouse_atlas | 0.081 | 0.024 | 0.105 | |
| ref_pan_indrop | 0.092 | 0.020 | 0.112 | |
| ref_pan_smartseq2 | 0.083 | 0.024 | 0.107 | |
| ref_tabula_muris_drop | 0.085 | 0.024 | 0.108 | |
| ref_tabula_muris_facs | 0.079 | 0.032 | 0.111 | |