Multiple platform build/check report for BioC 3.19 - BUILD results for waddR on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.4.0 (2024-04-24) -- "Puppy Cup"	4757
palomino3	Windows Server 2022 Datacenter	x64	4.4.0 (2024-04-24 ucrt) -- "Puppy Cup"	4491
lconway	macOS 12.7.1 Monterey	x86_64	4.4.0 (2024-04-24) -- "Puppy Cup"	4522
kjohnson3	macOS 13.6.5 Ventura	arm64	4.4.0 (2024-04-24) -- "Puppy Cup"	4468
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for waddR on kjohnson3

To the developers/maintainers of the waddR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/waddR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: waddR

Version: 1.18.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data waddR

StartedAt: 2024-06-10 06:35:39 -0400 (Mon, 10 Jun 2024)

EndedAt: 2024-06-10 06:37:55 -0400 (Mon, 10 Jun 2024)

EllapsedTime: 136.4 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data waddR
###
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* checking for file ‘waddR/DESCRIPTION’ ... OK
* preparing ‘waddR’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘waddR.Rmd’ using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "waddR", and the latter is "The `waddR` package". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘waddR.Rmd’

--- re-building ‘wasserstein_metric.Rmd’ using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "wasserstein_metric", and the latter is "2-Wasserstein distance calculation". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘wasserstein_metric.Rmd’

--- re-building ‘wasserstein_singlecell.Rmd’ using rmarkdown

Quitting from lines 92-94 [unnamed-chunk-6] (wasserstein_singlecell.Rmd)
Error: processing vignette 'wasserstein_singlecell.Rmd' failed with diagnostics:
wrong args for environment subassignment
--- failed re-building ‘wasserstein_singlecell.Rmd’

--- re-building ‘wasserstein_test.Rmd’ using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "wasserstein_test", and the latter is "Two-sample tests based on the 2-Wasserstein distance". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘wasserstein_test.Rmd’

SUMMARY: processing the following file failed:
  ‘wasserstein_singlecell.Rmd’

Error: Vignette re-building failed.
Execution halted