| Back to Multiple platform build/check report for BioC 3.19: simplified long |
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This page was generated on 2024-05-08 11:41:27 -0400 (Wed, 08 May 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4707 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup" | 4484 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4514 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" | 4480 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2104/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| supraHex 1.42.0 (landing page) Hai Fang
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the supraHex package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/supraHex.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: supraHex |
| Version: 1.42.0 |
| Command: /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD check --install=check:supraHex.install-out.txt --library=/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library --no-vignettes --timings supraHex_1.42.0.tar.gz |
| StartedAt: 2024-05-08 12:29:02 -0000 (Wed, 08 May 2024) |
| EndedAt: 2024-05-08 12:30:26 -0000 (Wed, 08 May 2024) |
| EllapsedTime: 84.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: supraHex.Rcheck |
| Warnings: 0 |
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###
### Running command:
###
### /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD check --install=check:supraHex.install-out.txt --library=/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library --no-vignettes --timings supraHex_1.42.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.19-bioc/meat/supraHex.Rcheck’
* using R version 4.4.0 beta (2024-04-15 r86425)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
gcc (GCC) 10.3.1
GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘supraHex/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘supraHex’ version ‘1.42.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘supraHex’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
visCompReorder 5.029 0.107 5.147
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
supraHex.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD INSTALL supraHex ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library’ * installing *source* package ‘supraHex’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (supraHex)
supraHex.Rcheck/supraHex-Ex.timings
| name | user | system | elapsed | |
| sBMH | 0.091 | 0.004 | 0.095 | |
| sCompReorder | 3.602 | 0.144 | 3.754 | |
| sDistance | 0.384 | 0.000 | 0.386 | |
| sDmat | 0.399 | 0.024 | 0.429 | |
| sDmatCluster | 0.551 | 0.004 | 0.556 | |
| sDmatMinima | 0.406 | 0.004 | 0.411 | |
| sHexDist | 0.009 | 0.000 | 0.009 | |
| sHexGrid | 0.002 | 0.000 | 0.002 | |
| sHexGridVariant | 0.002 | 0.000 | 0.002 | |
| sHexPolygon | 0.135 | 0.004 | 0.140 | |
| sInitial | 0.005 | 0.004 | 0.009 | |
| sMapOverlay | 0.465 | 0.008 | 0.474 | |
| sNeighAny | 0.029 | 0.000 | 0.030 | |
| sNeighDirect | 0.011 | 0.000 | 0.011 | |
| sPipeline | 0.001 | 0.000 | 0.000 | |
| sTopology | 0.05 | 0.00 | 0.05 | |
| sTrainBatch | 0.065 | 0.000 | 0.065 | |
| sTrainSeq | 0.502 | 0.012 | 0.515 | |
| sTrainology | 0.018 | 0.000 | 0.019 | |
| sWriteData | 0.960 | 0.042 | 0.995 | |
| visColoralpha | 0.004 | 0.000 | 0.004 | |
| visColorbar | 0.03 | 0.00 | 0.03 | |
| visColormap | 0.000 | 0.004 | 0.004 | |
| visCompReorder | 5.029 | 0.107 | 5.147 | |
| visDmatCluster | 0.000 | 0.000 | 0.001 | |
| visDmatHeatmap | 0.000 | 0.000 | 0.001 | |
| visHeatmap | 0.133 | 0.000 | 0.133 | |
| visHeatmapAdv | 0.5 | 0.0 | 0.5 | |
| visHexAnimate | 0.001 | 0.000 | 0.001 | |
| visHexBarplot | 1.057 | 0.008 | 1.067 | |
| visHexComp | 0.362 | 0.000 | 0.362 | |
| visHexGrid | 0.359 | 0.000 | 0.360 | |
| visHexMapping | 1.871 | 0.036 | 1.910 | |
| visHexMulComp | 1.393 | 0.012 | 1.408 | |
| visHexPattern | 1.955 | 0.060 | 2.018 | |
| visKernels | 0.014 | 0.000 | 0.014 | |
| visTreeBSclust | 0 | 0 | 0 | |
| visTreeBootstrap | 0.000 | 0.000 | 0.001 | |
| visVp | 0.021 | 0.000 | 0.022 | |