Multiple platform build/check report for BioC 3.19 - CHECK results for graper on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.4.0 (2024-04-24) -- "Puppy Cup"	4757
palomino3	Windows Server 2022 Datacenter	x64	4.4.0 (2024-04-24 ucrt) -- "Puppy Cup"	4491
lconway	macOS 12.7.1 Monterey	x86_64	4.4.0 (2024-04-24) -- "Puppy Cup"	4522
kjohnson3	macOS 13.6.5 Ventura	arm64	4.4.0 (2024-04-24) -- "Puppy Cup"	4468
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for graper on kjohnson3

To the developers/maintainers of the graper package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: graper

Version: 1.20.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.20.0.tar.gz

StartedAt: 2024-06-10 17:47:42 -0400 (Mon, 10 Jun 2024)

EndedAt: 2024-06-10 17:49:44 -0400 (Mon, 10 Jun 2024)

EllapsedTime: 121.8 seconds

RetCode: 0

Status: WARNINGS

CheckDir: graper.Rcheck

Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.20.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/graper.Rcheck’
* using R version 4.4.0 (2024-04-24)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.6.5
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.20.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... WARNING
Found the following significant warnings:
  /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/BH/include/boost/math/tools/config.hpp:23:6: warning: "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-W#warnings]
  #    warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"
See ‘/Users/biocbuild/bbs-3.19-bioc/meat/graper.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
* used SDK: ‘MacOSX11.3.sdk’
* checking C++ specification ... NOTE
  Specified C++11: please drop specification unless essential
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  ‘/Users/biocbuild/bbs-3.19-bioc/meat/graper.Rcheck/00check.log’
for details.

Installation output

graper.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL graper
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’
* installing *source* package ‘graper’ ...
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
using C++11
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/BH/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/BH/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c fit_graper.cpp -o fit_graper.o
In file included from fit_graper.cpp:4:
In file included from ./graper_linear_dense_ff.h:2:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/BH/include/boost/math/special_functions/digamma.hpp:15:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/BH/include/boost/math/special_functions/math_fwd.hpp:29:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/BH/include/boost/math/special_functions/detail/round_fwd.hpp:11:
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/BH/include/boost/math/tools/config.hpp:23:6: warning: "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-W#warnings]
#    warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"
     ^
1 warning generated.
clang++ -arch arm64 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o graper.so RcppExports.o fit_graper.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lemutls_w -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/00LOCK-graper/00new/graper/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (graper)

Tests output

graper.Rcheck/tests/testthat.Rout


R version 4.4.0 (2024-04-24) -- "Puppy Cup"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(graper)
> 
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-858.711
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-586.637
ELB improved by 272.075

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-527.907
ELB improved by 58.73

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-483.478
ELB improved by 44.4283

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-462.286
ELB improved by 21.1918

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454
ELB improved by 8.28613

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.215
ELB improved by 4.78574

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.313
ELB improved by 3.90167

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.476
ELB improved by 3.83673

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.286
ELB improved by 4.19026

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.639
ELB improved by 4.64723

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.789
ELB improved by 4.84951

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.271
ELB improved by 4.5177

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.568
ELB improved by 3.70296

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.883
ELB improved by 2.68595

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.132
ELB improved by 1.75042

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.043
ELB improved by 1.08882

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.348
ELB improved by 0.695486

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.872
ELB improved by 0.475672

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.521
ELB improved by 0.351489

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.243
ELB improved by 0.277916

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.011
ELB improved by 0.231571

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.811
ELB improved by 0.200492

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.632
ELB improved by 0.178398

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.47
ELB improved by 0.161846

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.322
ELB improved by 0.148857

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.183
ELB improved by 0.138247

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.054
ELB improved by 0.129285

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.933
ELB improved by 0.121512

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.818
ELB improved by 0.114648

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.709
ELB improved by 0.108528

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.606
ELB improved by 0.103076

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.508
ELB improved by 0.0982798

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.414
ELB improved by 0.0941837

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.323
ELB improved by 0.0908748

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.234
ELB improved by 0.0884687

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.147
ELB improved by 0.0870678

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.061
ELB improved by 0.0866681

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.974
ELB improved by 0.0869921

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.886
ELB improved by 0.0873051

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.8
ELB improved by 0.0864467

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.717
ELB improved by 0.0833536

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.639
ELB improved by 0.0778393

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.568
ELB improved by 0.0707835

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.505
ELB improved by 0.0634381

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.448
ELB improved by 0.0566711

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.397
ELB improved by 0.0507956

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.351
ELB improved by 0.0457867

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.31
ELB improved by 0.0415067

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.272
ELB improved by 0.0378144

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.237
ELB improved by 0.0345964

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.206
ELB improved by 0.0317666

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.176
ELB improved by 0.0292599

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.149
ELB improved by 0.0270256

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.124
ELB improved by 0.0250237

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.101
ELB improved by 0.0232219

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.08
ELB improved by 0.0215939

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.059
ELB improved by 0.0201178

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.041
ELB improved by 0.0187755

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.023
ELB improved by 0.0175517

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.007
ELB improved by 0.0164333

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.991
ELB improved by 0.0154093

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.977
ELB improved by 0.0144701

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.963
ELB improved by 0.0136073

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.95
ELB improved by 0.0128136

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.938
ELB improved by 0.0120827

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.927
ELB improved by 0.0114089

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.916
ELB improved by 0.0107872

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.906
ELB improved by 0.0102131

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.896
ELB improved by 0.0096826

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-815.789
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-548.214
ELB improved by 267.576

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-489.325
ELB improved by 58.8884

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-453.249
ELB improved by 36.0766

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.358
ELB improved by 14.8907

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.1
ELB improved by 6.25793

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.362
ELB improved by 3.73815

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.391
ELB improved by 2.97142

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.622
ELB improved by 2.76842

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.856
ELB improved by 2.76614

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.012
ELB improved by 2.84401

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.064
ELB improved by 2.94753

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.042
ELB improved by 3.02206

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.067
ELB improved by 2.97518

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.351
ELB improved by 2.71585

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.096
ELB improved by 2.25501

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.391
ELB improved by 1.70496

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.189
ELB improved by 1.20219

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.358
ELB improved by 0.831137

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.764
ELB improved by 0.593637

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.312
ELB improved by 0.451984

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.944
ELB improved by 0.368885

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.624
ELB improved by 0.319694

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.333
ELB improved by 0.290809

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.058
ELB improved by 0.275315

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.788
ELB improved by 0.269695

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.516
ELB improved by 0.272043

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.235
ELB improved by 0.28132

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.938
ELB improved by 0.297114

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.618
ELB improved by 0.319562

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.269
ELB improved by 0.349314

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.881
ELB improved by 0.38747

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.446
ELB improved by 0.435323

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.952
ELB improved by 0.493564

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.392
ELB improved by 0.560562

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.761
ELB improved by 0.630705

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.065
ELB improved by 0.696358

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.311
ELB improved by 0.754043

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.504
ELB improved by 0.806335

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.646
ELB improved by 0.858177

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.727
ELB improved by 0.918992

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.714
ELB improved by 1.01294

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.535
ELB improved by 1.1793

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.169
ELB improved by 1.36624

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.806
ELB improved by 1.36268

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.548
ELB improved by 1.25774

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.316
ELB improved by 1.23247

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.216
ELB improved by 1.10003

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.393
ELB improved by 0.822443

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.677
ELB improved by 0.71646

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.779
ELB improved by 0.897658

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.686
ELB improved by 1.09299

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.831
ELB improved by 0.855137

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.334
ELB improved by 0.496724

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.024
ELB improved by 0.310141

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.794
ELB improved by 0.230279

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.606
ELB improved by 0.187689

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.455
ELB improved by 0.15084

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.342
ELB improved by 0.113359

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.261
ELB improved by 0.081169

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.203
ELB improved by 0.0582556

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.159
ELB improved by 0.0434955

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.125
ELB improved by 0.0341362

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.097
ELB improved by 0.0279658

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.073
ELB improved by 0.0236269

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.053
ELB improved by 0.0203686

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.035
ELB improved by 0.0177891

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.02
ELB improved by 0.0156711

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.006
ELB improved by 0.0138917

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.993
ELB improved by 0.0123754

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.982
ELB improved by 0.0110719

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.972
ELB improved by 0.00994478

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-879.967
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-573.773
ELB improved by 306.194

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-517.426
ELB improved by 56.3471

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-481.506
ELB improved by 35.9207

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-467.575
ELB improved by 13.9307

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-461.694
ELB improved by 5.88066

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-457.549
ELB improved by 4.14505

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-453.855
ELB improved by 3.69444

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.254
ELB improved by 3.60032

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.677
ELB improved by 3.57765

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.227
ELB improved by 3.44983

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.118
ELB improved by 3.10872

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.547
ELB improved by 2.57081

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.583
ELB improved by 1.96428

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.159
ELB improved by 1.42366

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.149
ELB improved by 1.00998

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.429
ELB improved by 0.719986

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.903
ELB improved by 0.525909

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.505
ELB improved by 0.398246

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.192
ELB improved by 0.313383

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.937
ELB improved by 0.255043

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.724
ELB improved by 0.213095

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.542
ELB improved by 0.181579

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.385
ELB improved by 0.157025

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.248
ELB improved by 0.137359

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.126
ELB improved by 0.121279

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.019
ELB improved by 0.107922

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.922
ELB improved by 0.0966862

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.835
ELB improved by 0.0871341

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.756
ELB improved by 0.07894

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.684
ELB improved by 0.0718553

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.618
ELB improved by 0.0656871

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.558
ELB improved by 0.060284

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.502
ELB improved by 0.0555253

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.451
ELB improved by 0.0513141

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.404
ELB improved by 0.0475716

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.359
ELB improved by 0.0442336

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.318
ELB improved by 0.0412467

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.28
ELB improved by 0.0385669

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.243
ELB improved by 0.0361573

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.209
ELB improved by 0.033987

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.177
ELB improved by 0.0320299

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.147
ELB improved by 0.0302642

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.118
ELB improved by 0.0286713

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.091
ELB improved by 0.0272356

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.065
ELB improved by 0.0259441

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.04
ELB improved by 0.0247857

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.017
ELB improved by 0.0237514

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.994
ELB improved by 0.0228336

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.972
ELB improved by 0.0220259

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.95
ELB improved by 0.0213231

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.93
ELB improved by 0.0207205

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.91
ELB improved by 0.0202134

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.89
ELB improved by 0.0197971

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.87
ELB improved by 0.0194657

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.851
ELB improved by 0.0192114

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.832
ELB improved by 0.019024

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.813
ELB improved by 0.0188897

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.794
ELB improved by 0.0187911

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.776
ELB improved by 0.0187065

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.757
ELB improved by 0.0186112

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.739
ELB improved by 0.0184788

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.72
ELB improved by 0.0182841

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.702
ELB improved by 0.0180062

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.685
ELB improved by 0.0176318

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.668
ELB improved by 0.0171577

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.651
ELB improved by 0.0165913

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.635
ELB improved by 0.0159501

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.62
ELB improved by 0.0152589

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.605
ELB improved by 0.014546

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.591
ELB improved by 0.0138395

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.578
ELB improved by 0.0131638

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.566
ELB improved by 0.012538

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.554
ELB improved by 0.0119744

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.542
ELB improved by 0.0114791

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.531
ELB improved by 0.0110528

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.52
ELB improved by 0.0106922

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.51
ELB improved by 0.0103913

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.5
ELB improved by 0.0101429

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.49
ELB improved by 0.00993922

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-859.116
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-559.794
ELB improved by 299.323

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-500.263
ELB improved by 59.531

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-465.581
ELB improved by 34.6821

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.744
ELB improved by 13.837

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.895
ELB improved by 6.84839

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.482
ELB improved by 5.4129

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.888
ELB improved by 5.59413

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.603
ELB improved by 6.28493

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.815
ELB improved by 6.78834

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.281
ELB improved by 6.53374

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409
ELB improved by 5.28157

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.413
ELB improved by 3.58651

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.178
ELB improved by 2.23514

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.76
ELB improved by 1.41783

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.796
ELB improved by 0.964526

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.088
ELB improved by 0.707326

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.537
ELB improved by 0.551025

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.088
ELB improved by 0.448901

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.71
ELB improved by 0.378409

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.382
ELB improved by 0.327997

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.091
ELB improved by 0.290786

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.83
ELB improved by 0.2614

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.595
ELB improved by 0.234806

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.387
ELB improved by 0.207473

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.208
ELB improved by 0.179374

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.055
ELB improved by 0.153202

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.924
ELB improved by 0.131261

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.81
ELB improved by 0.113979

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.709
ELB improved by 0.100611

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.619
ELB improved by 0.0902002

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.537
ELB improved by 0.0819872

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.461
ELB improved by 0.0754613

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.391
ELB improved by 0.0703089

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.325
ELB improved by 0.0663611

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.261
ELB improved by 0.0635637

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.199
ELB improved by 0.0619678

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.137
ELB improved by 0.0617356

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.074
ELB improved by 0.0631506

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.008
ELB improved by 0.0666024

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.935
ELB improved by 0.0724748

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.854
ELB improved by 0.0807923

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.764
ELB improved by 0.0904995

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.665
ELB improved by 0.0987039

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.564
ELB improved by 0.101252

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.468
ELB improved by 0.0957399

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.384
ELB improved by 0.0842297

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.312
ELB improved by 0.0714977

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.251
ELB improved by 0.0610624

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.198
ELB improved by 0.0538493

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.148
ELB improved by 0.0492838

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.102
ELB improved by 0.046467

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.057
ELB improved by 0.0446745

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.014
ELB improved by 0.0434355

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.971
ELB improved by 0.0424744

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.93
ELB improved by 0.0416384

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.889
ELB improved by 0.0408452

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.849
ELB improved by 0.0400514

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.809
ELB improved by 0.0392339

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.771
ELB improved by 0.0383819

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.734
ELB improved by 0.037491

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.697
ELB improved by 0.0365613

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.661
ELB improved by 0.0355958

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.627
ELB improved by 0.0345997

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.593
ELB improved by 0.0335794

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.561
ELB improved by 0.0325422

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.529
ELB improved by 0.0314959

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.499
ELB improved by 0.0304484

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.469
ELB improved by 0.0294074

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.441
ELB improved by 0.02838

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.414
ELB improved by 0.0273729

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.387
ELB improved by 0.0263919

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.362
ELB improved by 0.0254421

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.337
ELB improved by 0.0245276

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.314
ELB improved by 0.023652

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.291
ELB improved by 0.0228178

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.269
ELB improved by 0.0220271

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.247
ELB improved by 0.0212814

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.227
ELB improved by 0.0205816

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.207
ELB improved by 0.0199286

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.188
ELB improved by 0.0193227

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.169
ELB improved by 0.0187643

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.151
ELB improved by 0.0182539

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.133
ELB improved by 0.0177923

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.115
ELB improved by 0.0173805

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.098
ELB improved by 0.0170202

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.082
ELB improved by 0.0167143

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.065
ELB improved by 0.0164668

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.049
ELB improved by 0.0162838

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.033
ELB improved by 0.0161746

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.017
ELB improved by 0.0161525

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394
ELB improved by 0.0162376

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.984
ELB improved by 0.0164604

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.967
ELB improved by 0.0168679

iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.949
ELB improved by 0.017534

iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.931
ELB improved by 0.0185787

iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.911
ELB improved by 0.0202008

iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.888
ELB improved by 0.0227371

iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.861
ELB improved by 0.0267633

iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.828
ELB improved by 0.0332435

iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.784
ELB improved by 0.0436567

iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.725
ELB improved by 0.0597245

iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.643
ELB improved by 0.0817786

iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.537
ELB improved by 0.105455

iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.416
ELB improved by 0.121676

iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.29
ELB improved by 0.125807

iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.167
ELB improved by 0.123155

iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.046
ELB improved by 0.120635

iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.925
ELB improved by 0.120729

iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.802
ELB improved by 0.12314

iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.675
ELB improved by 0.127057

iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.543
ELB improved by 0.131867

iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.406
ELB improved by 0.137218

iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.263
ELB improved by 0.143001

iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.114
ELB improved by 0.149379

iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.957
ELB improved by 0.156838

iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.791
ELB improved by 0.166161

iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.613
ELB improved by 0.177983

iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.421
ELB improved by 0.191381

iteration 120
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.219
ELB improved by 0.201971

iteration 121
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.016
ELB improved by 0.203284

iteration 122
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.822
ELB improved by 0.193725

iteration 123
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.642
ELB improved by 0.180336

iteration 124
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.469
ELB improved by 0.173446

iteration 125
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.29
ELB improved by 0.179038

iteration 126
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.101
ELB improved by 0.188749

iteration 127
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.923
ELB improved by 0.177693

iteration 128
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.783
ELB improved by 0.13998

iteration 129
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.681
ELB improved by 0.101979

iteration 130
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.601
ELB improved by 0.0796863

iteration 131
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.53
ELB improved by 0.0715275

iteration 132
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.457
ELB improved by 0.0731819

iteration 133
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.375
ELB improved by 0.08177

iteration 134
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.28
ELB improved by 0.0949521

iteration 135
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.17
ELB improved by 0.110119

iteration 136
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.046
ELB improved by 0.123574

iteration 137
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.917
ELB improved by 0.129271

iteration 138
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.796
ELB improved by 0.121314

iteration 139
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.695
ELB improved by 0.100936

iteration 140
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.618
ELB improved by 0.0764276

iteration 141
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.563
ELB improved by 0.0549903

iteration 142
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.524
ELB improved by 0.0389766

iteration 143
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.497
ELB improved by 0.0278083

iteration 144
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.476
ELB improved by 0.0201848

iteration 145
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.461
ELB improved by 0.0149737

iteration 146
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.45
ELB improved by 0.0113702

iteration 147
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.441
ELB improved by 0.00883983

ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
> 
> proc.time()
   user  system elapsed 
  2.855   0.307   4.793

Example timings

graper.Rcheck/graper-Ex.timings

name	user	system	elapsed
coef.graper	0.061	0.016	0.122
getPIPs	0.056	0.011	0.079
graper	0.093	0.019	0.151
makeExampleData	0.010	0.001	0.015
makeExampleDataWithUnequalGroups	0.044	0.003	0.080
plotELBO	0.249	0.021	0.418
plotGroupPenalties	0.820	0.029	1.251
plotPosterior	0.654	0.024	1.044
predict.graper	2.306	0.165	3.748
print.graper	0.057	0.011	0.103