Multiple platform build/check report for BioC 3.19 - BUILD results for beadarray on lconway

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.4.0 (2024-04-24) -- "Puppy Cup"	4757
palomino3	Windows Server 2022 Datacenter	x64	4.4.0 (2024-04-24 ucrt) -- "Puppy Cup"	4491
lconway	macOS 12.7.1 Monterey	x86_64	4.4.0 (2024-04-24) -- "Puppy Cup"	4522
kjohnson3	macOS 13.6.5 Ventura	arm64	4.4.0 (2024-04-24) -- "Puppy Cup"	4468
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for beadarray on lconway

To the developers/maintainers of the beadarray package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/beadarray.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: beadarray

Version: 2.54.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data beadarray

StartedAt: 2024-06-09 15:55:17 -0400 (Sun, 09 Jun 2024)

EndedAt: 2024-06-09 15:58:14 -0400 (Sun, 09 Jun 2024)

EllapsedTime: 176.5 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data beadarray
###
##############################################################################
##############################################################################


* checking for file ‘beadarray/DESCRIPTION’ ... OK
* preparing ‘beadarray’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘ImageProcessing.rnw’ using knitr
Error: processing vignette 'ImageProcessing.rnw' failed with diagnostics:
Running 'texi2dvi' on 'ImageProcessing.tex' failed.
LaTeX errors:
! Package xcolor Error: Undefined color `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Emergency stop.
 ...                                              
                                                  
l.64 ...}{rgb}{0.941, 0.941, 0.941}\color{fgcolor}
                                                  \begin{kframe}
!  ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘ImageProcessing.rnw’

--- re-building ‘beadarray.rnw’ using knitr
Error: processing vignette 'beadarray.rnw' failed with diagnostics:
Running 'texi2dvi' on 'beadarray.tex' failed.
LaTeX errors:
! Package xcolor Error: Undefined color `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Emergency stop.
 ...                                              
                                                  
l.66 ...}{rgb}{0.941, 0.941, 0.941}\color{fgcolor}
                                                  \begin{kframe}
!  ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘beadarray.rnw’

--- re-building ‘beadlevel.rnw’ using knitr
2024-06-09 15:56:24.053 R[35455:26193230] XType: com.apple.fonts is not accessible.
2024-06-09 15:56:24.054 R[35455:26193230] XType: XTFontStaticRegistry is enabled.
Error: processing vignette 'beadlevel.rnw' failed with diagnostics:
Running 'texi2dvi' on 'beadlevel.tex' failed.
LaTeX errors:
! Package xcolor Error: Undefined color `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Emergency stop.
 ...                                              
                                                  
l.58 ...}{rgb}{0.941, 0.941, 0.941}\color{fgcolor}
                                                  \begin{kframe}
!  ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘beadlevel.rnw’

--- re-building ‘beadsummary.rnw’ using knitr
Error: processing vignette 'beadsummary.rnw' failed with diagnostics:
Running 'texi2dvi' on 'beadsummary.tex' failed.
LaTeX errors:
! Package xcolor Error: Undefined color `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Emergency stop.
 ...                                              
                                                  
l.65 ...}{rgb}{0.941, 0.941, 0.941}\color{fgcolor}
                                                  \begin{kframe}
!  ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘beadsummary.rnw’

SUMMARY: processing the following files failed:
  ‘ImageProcessing.rnw’ ‘beadarray.rnw’ ‘beadlevel.rnw’
  ‘beadsummary.rnw’

Error: Vignette re-building failed.
Execution halted