Multiple platform build/check report for BioC 3.19 - BUILD results for TypeInfo on palomino3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.4.0 (2024-04-24) -- "Puppy Cup"	4760
palomino3	Windows Server 2022 Datacenter	x64	4.4.0 (2024-04-24 ucrt) -- "Puppy Cup"	4494
merida1	macOS 12.7.4 Monterey	x86_64	4.4.0 (2024-04-24) -- "Puppy Cup"	4508
kjohnson1	macOS 13.6.6 Ventura	arm64	4.4.0 (2024-04-24) -- "Puppy Cup"	4466
palomino7	Windows Server 2022 Datacenter	x64	4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"	4362
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for TypeInfo on palomino3

To the developers/maintainers of the TypeInfo package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TypeInfo.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: TypeInfo

Version: 1.70.0

Command: chmod a+r TypeInfo -R && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data TypeInfo

StartedAt: 2024-06-26 22:29:52 -0400 (Wed, 26 Jun 2024)

EndedAt: 2024-06-26 22:30:04 -0400 (Wed, 26 Jun 2024)

EllapsedTime: 12.3 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r TypeInfo -R && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data TypeInfo
###
##############################################################################
##############################################################################


* checking for file 'TypeInfo/DESCRIPTION' ... OK
* preparing 'TypeInfo':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'TypeInfoNews.Rnw' using Sweave
texify: major issue: User/administrator updates are out-of-sync.
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "TypeInfoNews.tex" --max-iterations=20 -I "F:/biocbuild/bbs-3.19-bioc/R/share/texmf/tex/latex" -I "F:/biocbuild/bbs-3.19-bioc/R/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'TypeInfoNews.Rnw' failed with diagnostics:
running 'texi2dvi' on 'TypeInfoNews.tex' failed

LaTeX errors:
tes/TypeInfoNews.tex:221: Argument of \__intarray_bounds_error:NNnw has an extr
a }.
<inserted text> 
                \par 
l.221 
tes/TypeInfoNews.tex:221: Paragraph ended before \__intarray_bounds_error:NNnw 
was complete.
<to be read again> 
                   \par 
l.221 
tes/TypeInfoNews.tex:221: Argument of \__intarray_bounds_error:NNnw has an extr
a }.
<inserted text> 
                \par 
l.221 
tes/TypeInfoNews.tex:221: Paragraph ended before \__intarray_bounds_error:NNnw 
was complete.
<to be read again> 
                   \par 
l.221 

--- failed re-building 'TypeInfoNews.Rnw'

SUMMARY: processing the following file failed:
  'TypeInfoNews.Rnw'

Error: Vignette re-building failed.
Execution halted