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This page was generated on 2024-05-09 11:41:24 -0400 (Thu, 09 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 (2024-04-24) -- "Puppy Cup" 4748
palomino3Windows Server 2022 Datacenterx644.4.0 (2024-04-24 ucrt) -- "Puppy Cup" 4484
lconwaymacOS 12.7.1 Montereyx86_644.4.0 (2024-04-24) -- "Puppy Cup" 4514
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" 4480
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1859/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SANTA 2.40.0  (landing page)
Alex Cornish
Snapshot Date: 2024-05-08 14:00:19 -0400 (Wed, 08 May 2024)
git_url: https://git.bioconductor.org/packages/SANTA
git_branch: RELEASE_3_19
git_last_commit: b2959c3
git_last_commit_date: 2024-04-30 11:31:10 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped
kjohnson3macOS 13.6.5 Ventura / arm64see weekly results here

BUILD results for SANTA on kunpeng2


To the developers/maintainers of the SANTA package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SANTA.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: SANTA
Version: 2.40.0
Command: /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD build --keep-empty-dirs --no-resave-data SANTA
StartedAt: 2024-05-09 03:15:53 -0000 (Thu, 09 May 2024)
EndedAt: 2024-05-09 03:16:02 -0000 (Thu, 09 May 2024)
EllapsedTime: 9.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD build --keep-empty-dirs --no-resave-data SANTA
###
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* checking for file ‘SANTA/DESCRIPTION’ ... OK
* preparing ‘SANTA’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘SANTA-vignette.Rmd’ using rmarkdown
Error: processing vignette 'SANTA-vignette.Rmd' failed with diagnostics:
The closing fence on line 14 ("```") in SANTA-vignette.Rmd does not match the opening fence "````" on line 10. You are recommended to fix either the opening or closing fence of the code chunk to use exactly the same numbers of backticks and same level of indentation (or blockquote). See https://yihui.org/en/2021/10/unbalanced-delimiters/ for more info.
Error: tangling vignette 'SANTA-vignette.Rmd' failed with diagnostics:
The closing fence on line 14 ("```") in SANTA-vignette.Rmd does not match the opening fence "````" on line 10. You are recommended to fix either the opening or closing fence of the code chunk to use exactly the same numbers of backticks and same level of indentation (or blockquote). See https://yihui.org/en/2021/10/unbalanced-delimiters/ for more info.
--- failed re-building ‘SANTA-vignette.Rmd’

SUMMARY: processing the following files failed:
  ‘SANTA-vignette.Rmd’ ‘SANTA-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted