| Back to Multiple platform build/check report for BioC 3.19: simplified long |
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This page was generated on 2024-10-18 20:38 -0400 (Fri, 18 Oct 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4763 |
| palomino7 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4500 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4530 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4480 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1791/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| RNAinteract 1.52.0 (landing page) Mike Smith
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | |||||||||
|
To the developers/maintainers of the RNAinteract package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RNAinteract.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: RNAinteract |
| Version: 1.52.0 |
| Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:RNAinteract.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings RNAinteract_1.52.0.tar.gz |
| StartedAt: 2024-10-17 04:27:16 -0400 (Thu, 17 Oct 2024) |
| EndedAt: 2024-10-17 04:30:40 -0400 (Thu, 17 Oct 2024) |
| EllapsedTime: 204.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: RNAinteract.Rcheck |
| Warnings: 0 |
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### Running command:
###
### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:RNAinteract.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings RNAinteract_1.52.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.19-bioc/meat/RNAinteract.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.5 LTS
* using session charset: UTF-8
* checking for file ‘RNAinteract/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RNAinteract’ version ‘1.52.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RNAinteract’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘ICS’
All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.19-bioc/meat/RNAinteract.Rcheck/00check.log’
for details.
RNAinteract.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL RNAinteract ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’ * installing *source* package ‘RNAinteract’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RNAinteract)
RNAinteract.Rcheck/RNAinteract-Ex.timings
| name | user | system | elapsed | |
| RNAinteract-class | 0.000 | 0.002 | 0.003 | |
| bindsamples | 0.109 | 0.000 | 0.109 | |
| computePI | 0.014 | 0.000 | 0.014 | |
| computePValues | 0.080 | 0.008 | 0.088 | |
| embedPCA | 0.008 | 0.004 | 0.012 | |
| estimateMainEffect | 0.624 | 0.055 | 0.679 | |
| getData | 0.076 | 0.000 | 0.076 | |
| getMain | 0.006 | 0.004 | 0.010 | |
| getReplicateData | 0.010 | 0.007 | 0.017 | |
| getSampleNames | 0.004 | 0.000 | 0.004 | |
| getScale | 0.004 | 0.000 | 0.004 | |
| grid.sgiHeatmap | 0.057 | 0.004 | 0.061 | |
| normalizeMainEffectQuery | 0.04 | 0.00 | 0.04 | |
| normalizeMainEffectTemplate | 0.029 | 0.000 | 0.029 | |
| normalizePlateEffect | 1.403 | 0.012 | 1.415 | |
| plotDoublePerturbation | 0.033 | 0.000 | 0.033 | |
| plotHeatmap | 0.035 | 0.000 | 0.035 | |
| reportAnnotation | 0.018 | 0.000 | 0.018 | |
| sgi | 0.004 | 0.000 | 0.004 | |
| sgisubset | 0.006 | 0.000 | 0.006 | |
| startReport | 0.013 | 0.000 | 0.013 | |
| summarizeSamples | 0.067 | 0.004 | 0.071 | |