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###
### Running command:
###
###   rm -rf NetPathMiner.buildbin-libdir && mkdir NetPathMiner.buildbin-libdir && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL --build --library=NetPathMiner.buildbin-libdir NetPathMiner_1.40.0.tar.gz
###
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* installing *source* package 'NetPathMiner' ...
** using staged installation
* searching for boost headers ... not found. Untarring boost.tar.gz
* searching for NPM_dependencies file ... not found.
* Searching for libxml2 and libSBML ... 
* compiling on Bioconductor machines...
* testing xmlParseFile in libxml2 ... failed
** Command: g++ -std=gnu++17 -o xml_test.out xml_test.cpp -DWIN_COMPILE -I. -IF:/biocbuild/bbs-3.19-bioc/R/include -IC:/libxml2/x64/include/libxml2 -LC:/libxml2/x64/lib -lxml2 -lws2_32 
** Error Message: C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(parser.o):parser.c:(.text+0x123f4): undefined reference to `__imp__snprintf'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(parser.o):parser.c:(.text+0x12606): undefined reference to `__imp__snprintf'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(parser.o):parser.c:(.text+0x1401f): undefined reference to `__imp__snprintf'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(tree.o):tree.c:(.text+0x1d06): undefined reference to `__imp__snprintf'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(tree.o):tree.c:(.text+0x4d32): undefined reference to `__imp__snprintf'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(tree.o):tree.c:(.text+0x534d): more undefined references to `__imp__snprintf' follow
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(tree.o):tree.c:(.text+0x9657): undefined reference to `__imp___iob_func'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(xmlIO.o):xmlIO.c:(.text+0xf72): undefined reference to `__imp___iob_func'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(xmlIO.o):xmlIO.c:(.text+0xfd5): undefined reference to `__imp___iob_func'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(xmlIO.o):xmlIO.c:(.text+0x1142): undefined reference to `__imp___iob_func'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(uri.o):uri.c:(.text+0xbd2): undefined reference to `__imp__snprintf'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(uri.o):uri.c:(.text+0x2e04): undefined reference to `__imp__snprintf'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(HTMLparser.o):HTMLparser.c:(.text+0x163d): undefined reference to `__imp__snprintf'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(HTMLparser.o):HTMLparser.c:(.text+0x169b): undefined reference to `__imp__snprintf'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(HTMLparser.o):HTMLparser.c:(.text+0x35d9): undefined reference to `__imp__snprintf'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(HTMLparser.o):HTMLparser.c:(.text+0x39c3): more undefined references to `__imp__snprintf' follow
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(xmlregexp.o):xmlregexp.c:(.text+0x532): undefined reference to `__imp___iob_func'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(xmlregexp.o):xmlregexp.c:(.text+0x6d8): undefined reference to `__imp__snprintf'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(xmlregexp.o):xmlregexp.c:(.text+0x7a1): undefined reference to `__imp__snprintf'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(xmlregexp.o):xmlregexp.c:(.text+0x7be): undefined reference to `__imp__snprintf'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(xmlregexp.o):xmlregexp.c:(.text+0x41f2): undefined reference to `__imp___iob_func'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(xmlregexp.o):xmlregexp.c:(.text+0x4900): undefined reference to `__imp___iob_func'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(xmlregexp.o):xmlregexp.c:(.text+0x68b1): undefined reference to `__imp___iob_func'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(xmlregexp.o):xmlregexp.c:(.text+0x7c7b): undefined reference to `__imp__snprintf'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(xmlregexp.o):xmlregexp.c:(.text+0x9537): undefined reference to `__imp___iob_func'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(xmlschemastypes.o):xmlschemastypes.c:(.text+0x6f60): undefined reference to `__imp__snprintf'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(xmlschemastypes.o):xmlschemastypes.c:(.text+0x7017): undefined reference to `__imp__snprintf'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(xmlschemastypes.o):xmlschemastypes.c:(.text+0x7069): undefined reference to `__imp__snprintf'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(xmlschemastypes.o):xmlschemastypes.c:(.text+0x70eb): undefined reference to `__imp__snprintf'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(xmlschemastypes.o):xmlschemastypes.c:(.text+0x7210): undefined reference to `__imp__snprintf'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(xmlschemastypes.o):xmlschemastypes.c:(.text+0x733c): more undefined references to `__imp__snprintf' follow
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(relaxng.o):relaxng.c:(.text+0x30f2): undefined reference to `__imp___iob_func'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(relaxng.o):relaxng.c:(.text+0x9f04): undefined reference to `__imp__snprintf'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(relaxng.o):relaxng.c:(.text+0xa400): undefined reference to `__imp__snprintf'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(relaxng.o):relaxng.c:(.text+0xd7f1): undefined reference to `__imp___iob_func'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(relaxng.o):relaxng.c:(.text+0xd91b): undefined reference to `__imp___iob_func'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(relaxng.o):relaxng.c:(.text+0xda42): undefined reference to `__imp___iob_func'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(relaxng.o):relaxng.c:(.text+0xdaf2): undefined reference to `__imp___iob_func'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(relaxng.o):relaxng.c:(.text+0xdb47): undefined reference to `__imp___iob_func'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(relaxng.o):relaxng.c:(.text+0xdb72): more undefined references to `__imp___iob_func' follow
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(entities.o):entities.c:(.text+0xc6c): undefined reference to `__imp__snprintf'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(encoding.o):encoding.c:(.text+0x2c97): undefined reference to `__imp__snprintf'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(encoding.o):encoding.c:(.text+0x2d28): undefined reference to `__imp__snprintf'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(encoding.o):encoding.c:(.text+0x2f12): undefined reference to `__imp__snprintf'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(error.o):error.c:(.text+0x6dd): undefined reference to `__imp___iob_func'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(parserInternals.o):parserInternals.c:(.text+0x55c): undefined reference to `__imp___iob_func'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(parserInternals.o):parserInternals.c:(.text+0xda2): undefined reference to `__imp__snprintf'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(parserInternals.o):parserInternals.c:(.text+0x10c6): undefined reference to `__imp__snprintf'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(parserInternals.o):parserInternals.c:(.text+0x1372): undefined reference to `__imp__snprintf'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(HTMLtree.o):HTMLtree.c:(.text+0x2e9): undefined reference to `__imp__snprintf'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(debugXML.o):debugXML.c:(.text+0x25): undefined reference to `__imp___iob_func'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(debugXML.o):debugXML.c:(.text+0x257f): undefined reference to `__imp___iob_func'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(debugXML.o):debugXML.c:(.text+0x27c1): undefined reference to `__imp___iob_func'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(debugXML.o):debugXML.c:(.text+0x28d2): undefined reference to `__imp___iob_func'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(debugXML.o):debugXML.c:(.text+0x2932): undefined reference to `__imp___iob_func'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(debugXML.o):debugXML.c:(.text+0x2985): more undefined references to `__imp___iob_func' follow
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(debugXML.o):debugXML.c:(.text+0x3707): undefined reference to `__imp__snprintf'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(debugXML.o):debugXML.c:(.text+0x37e3): undefined reference to `__imp__snprintf'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(debugXML.o):debugXML.c:(.text+0x3edd): undefined reference to `__imp___iob_func'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(debugXML.o):debugXML.c:(.text+0x3f20): undefined reference to `__imp___iob_func'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(debugXML.o):debugXML.c:(.text+0x3f5a): undefined reference to `__imp___iob_func'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(debugXML.o):debugXML.c:(.text+0x3fed): undefined reference to `__imp___iob_func'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(debugXML.o):debugXML.c:(.text+0x412b): undefined reference to `__imp___iob_func'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(debugXML.o):debugXML.c:(.text+0x4180): more undefined references to `__imp___iob_func' follow
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(xmlschemas.o):xmlschemas.c:(.text+0x944d): undefined reference to `__imp__snprintf'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(xmlschemas.o):xmlschemas.c:(.text+0x21a73): undefined reference to `__imp__snprintf'
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: C:/libxml2/x64/lib/libxml2.a(xmlschemas.o):xmlschemas.c:(.text+0x21ab2): undefined reference to `__imp__snprintf'
collect2.exe: error: ld returned 1 exit status

** Although libxml2 headers and binaries were found, compiler failed.
		This may be due to incomplete headers or corrupt library.
* testing readSBML, SBMLDocument::getModel in libSBML ... failed
** Command: g++ -std=gnu++17 -o sbml_test.out sbml_test.cpp -DWIN_COMPILE -I. -IF:/biocbuild/bbs-3.19-bioc/R/include -IC:/libsbml/x64/include -LC:/libsbml/x64/bin -lsbml 
** Error Message: In file included from C:/libsbml/x64/include/sbml/FunctionDefinition.h:136,
                 from C:/libsbml/x64/include/sbml/SBMLTransforms.h:52,
                 from C:/libsbml/x64/include/sbml/SBMLDocument.h:302,
                 from C:/libsbml/x64/include/sbml/SBMLTypes.h:43,
                 from sbml_test.cpp:3:
C:/libsbml/x64/include/sbml/ListOf.h:111:27: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
  111 | struct IdEq : public std::unary_function<SBase*, bool>
      |                           ^~~~~~~~~~~~~~
In file included from C:/rtools44/x86_64-w64-mingw32.static.posix/lib/gcc/x86_64-w64-mingw32.static.posix/13.2.0/include/c++/string:49,
                 from C:/libsbml/x64/include/sbml/util/util.h:49,
                 from C:/libsbml/x64/include/sbml/xml/XMLError.h:344,
                 from C:/libsbml/x64/include/sbml/SBMLError.h:461,
                 from C:/libsbml/x64/include/sbml/SBMLDocument.h:299:
C:/rtools44/x86_64-w64-mingw32.static.posix/lib/gcc/x86_64-w64-mingw32.static.posix/13.2.0/include/c++/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
C:\rtools44/x86_64-w64-mingw32.static.posix/bin/ld.exe: F:\biocbuild\bbs-3.19-bioc\tmp\ccsM9AKN.o:sbml_test.cpp:(.text+0x20): undefined reference to `SBMLDocument::getModel()'
collect2.exe: error: ld returned 1 exit status

** Although libSBML headers and binaries were found, compiler failed.
	Please ensure that libSBML is built using GCC compiler.
** libs
using C compiler: 'gcc.exe (GCC) 13.2.0'
using C++ compiler: 'G__~1.EXE (GCC) 13.2.0'
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -DWIN_COMPILE -I. -IF:/biocbuild/bbs-3.19-bioc/R/include    -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c PathRanker.cpp -o PathRanker.o
In file included from ./boost/mpl/aux_/na_assert.hpp:23,
                 from ./boost/mpl/arg.hpp:25,
                 from ./boost/mpl/placeholders.hpp:24,
                 from ./boost/iterator/iterator_categories.hpp:17,
                 from ./boost/graph/graph_traits.hpp:25,
                 from ./boost/graph/graph_utility.hpp:29,
                 from PathRanker.cpp:27:
./boost/mpl/assert.hpp:187:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
  187 | failed ************ (Pred::************
      |                     ^~~~~~~~~~~~~~~~~~~
  188 |       assert_arg( void (*)(Pred), typename assert_arg_pred<Pred>::type )
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  189 |     );
      |     ~                
./boost/mpl/assert.hpp:187:21: note: remove parentheses
  187 | failed ************ (Pred::************
      |                     ^~~~~~~~~~~~~~~~~~~
      |                     -
  188 |       assert_arg( void (*)(Pred), typename assert_arg_pred<Pred>::type )
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  189 |     );
      |     ~                
      |     -
./boost/mpl/assert.hpp:192:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
  192 | failed ************ (boost::mpl::not_<Pred>::************
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  193 |       assert_not_arg( void (*)(Pred), typename assert_arg_pred_not<Pred>::type )
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  194 |     );
      |     ~                
./boost/mpl/assert.hpp:192:21: note: remove parentheses
  192 | failed ************ (boost::mpl::not_<Pred>::************
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                     -
  193 |       assert_not_arg( void (*)(Pred), typename assert_arg_pred_not<Pred>::type )
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  194 |     );
      |     ~                
      |     -
gcc  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -DWIN_COMPILE -I. -IF:/biocbuild/bbs-3.19-bioc/R/include    -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c handlesegfault.c -o handlesegfault.o
gcc  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -DWIN_COMPILE -I. -IF:/biocbuild/bbs-3.19-bioc/R/include    -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c hme3m.c -o hme3m.o
gcc  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -DWIN_COMPILE -I. -IF:/biocbuild/bbs-3.19-bioc/R/include    -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c init.c -o init.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -DWIN_COMPILE -I. -IF:/biocbuild/bbs-3.19-bioc/R/include    -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c kgml_interface.cpp -o kgml_interface.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -DWIN_COMPILE -I. -IF:/biocbuild/bbs-3.19-bioc/R/include    -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c methods.cpp -o methods.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -DWIN_COMPILE -I. -IF:/biocbuild/bbs-3.19-bioc/R/include    -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c pathScope.cpp -o pathScope.o
In file included from ./boost/mpl/aux_/na_assert.hpp:23,
                 from ./boost/mpl/arg.hpp:25,
                 from ./boost/mpl/placeholders.hpp:24,
                 from ./boost/iterator/iterator_categories.hpp:17,
                 from ./boost/graph/graph_traits.hpp:25,
                 from ./boost/graph/graph_utility.hpp:29,
                 from pathScope.cpp:34:
./boost/mpl/assert.hpp:187:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
  187 | failed ************ (Pred::************
      |                     ^~~~~~~~~~~~~~~~~~~
  188 |       assert_arg( void (*)(Pred), typename assert_arg_pred<Pred>::type )
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  189 |     );
      |     ~                
./boost/mpl/assert.hpp:187:21: note: remove parentheses
  187 | failed ************ (Pred::************
      |                     ^~~~~~~~~~~~~~~~~~~
      |                     -
  188 |       assert_arg( void (*)(Pred), typename assert_arg_pred<Pred>::type )
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  189 |     );
      |     ~                
      |     -
./boost/mpl/assert.hpp:192:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
  192 | failed ************ (boost::mpl::not_<Pred>::************
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  193 |       assert_not_arg( void (*)(Pred), typename assert_arg_pred_not<Pred>::type )
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  194 |     );
      |     ~                
./boost/mpl/assert.hpp:192:21: note: remove parentheses
  192 | failed ************ (boost::mpl::not_<Pred>::************
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                     -
  193 |       assert_not_arg( void (*)(Pred), typename assert_arg_pred_not<Pred>::type )
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  194 |     );
      |     ~                
      |     -
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -DWIN_COMPILE -I. -IF:/biocbuild/bbs-3.19-bioc/R/include    -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c sbml_interface.cpp -o sbml_interface.o
g++ -std=gnu++17 -shared -s -static-libgcc -o NetPathMiner.dll tmp.def PathRanker.o handlesegfault.o hme3m.o init.o kgml_interface.o methods.o pathScope.o sbml_interface.o -LF:/biocbuild/bbs-3.19-bioc/R/bin/x64 -lRlapack -LF:/biocbuild/bbs-3.19-bioc/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.19-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.19-bioc/meat/NetPathMiner.buildbin-libdir/00LOCK-NetPathMiner/00new/NetPathMiner/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning in fun(libname, pkgname) :
  Package 'NetPathMiner' is deprecated and will be removed from
  Bioconductor version 3.20
** testing if installed package can be loaded from final location
Warning in fun(libname, pkgname) :
  Package 'NetPathMiner' is deprecated and will be removed from
  Bioconductor version 3.20
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'NetPathMiner' as NetPathMiner_1.40.0.zip
* DONE (NetPathMiner)