| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-10-18 20:39 -0400 (Fri, 18 Oct 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4763 |
| palomino7 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4500 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4530 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4480 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 552/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| DeProViR 1.0.0 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
|
To the developers/maintainers of the DeProViR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DeProViR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: DeProViR |
| Version: 1.0.0 |
| Command: chmod a+r DeProViR -R && E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data DeProViR |
| StartedAt: 2024-10-16 18:39:12 -0400 (Wed, 16 Oct 2024) |
| EndedAt: 2024-10-16 18:42:19 -0400 (Wed, 16 Oct 2024) |
| EllapsedTime: 187.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### chmod a+r DeProViR -R && E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data DeProViR
###
##############################################################################
##############################################################################
* checking for file 'DeProViR/DESCRIPTION' ... OK
* preparing 'DeProViR':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'DeProViR_tutorial.Rmd' using rmarkdown
2024-10-16 18:39:44.079456: I tensorflow/core/util/port.cc:113] oneDNN custom operations are on. You may see slightly different numerical results due to floating-point round-off errors from different computation orders. To turn them off, set the environment variable `TF_ENABLE_ONEDNN_OPTS=0`.
2024-10-16 18:39:56.704320: I tensorflow/core/util/port.cc:113] oneDNN custom operations are on. You may see slightly different numerical results due to floating-point round-off errors from different computation orders. To turn them off, set the environment variable `TF_ENABLE_ONEDNN_OPTS=0`.
2024-10-16 18:42:16.903979: I tensorflow/core/platform/cpu_feature_guard.cc:210] This TensorFlow binary is optimized to use available CPU instructions in performance-critical operations.
To enable the following instructions: AVX2 AVX512F AVX512_VNNI FMA, in other operations, rebuild TensorFlow with the appropriate compiler flags.
C:\PYTHON~1\Lib\site-packages\keras\src\layers\core\embedding.py:90: UserWarning: Argument `input_length` is deprecated. Just remove it.
warnings.warn(
Quitting from lines 218-246 [unnamed-chunk-2] (DeProViR_tutorial.Rmd)
Error: processing vignette 'DeProViR_tutorial.Rmd' failed with diagnostics:
no applicable method for 'compile' applied to an object of class "c('keras.src.models.functional.Functional', 'keras.models.functional.Functional', 'keras.src.ops.function.Function', 'keras.ops.function.Function', 'keras.src.models.model.Model', 'keras.models.model.Model', 'keras.src.backend.tensorflow.trainer.TensorFlowTrainer', 'keras.backend.tensorflow.trainer.TensorFlowTrainer', 'keras.src.trainers.trainer.Trainer', 'keras.trainers.trainer.Trainer', 'keras.src.layers.layer.Layer', 'keras.layers.layer.Layer', 'keras.src.backend.tensorflow.layer.TFLayer', 'keras.backend.tensorflow.layer.TFLayer', 'keras.src.backend.tensorflow.trackable.KerasAutoTrackable', 'keras.backend.tensorflow.trackable.KerasAutoTrackable', 'tensorflow.python.trackable.autotrackable.AutoTrackable', 'tensorflow.python.trackable.base.Trackable', 'keras.src.ops.operation.Operation', 'keras.ops.operation.Operation', 'keras.src.saving.keras_saveable.KerasSaveable', 'keras.saving.keras_saveable.KerasSaveable', 'python.builtin.object')"
--- failed re-building 'DeProViR_tutorial.Rmd'
SUMMARY: processing the following file failed:
'DeProViR_tutorial.Rmd'
Error: Vignette re-building failed.
Execution halted