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This page was generated on 2024-10-18 20:40 -0400 (Fri, 18 Oct 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4763
palomino7Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4500
merida1macOS 12.7.5 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4530
kjohnson1macOS 13.6.6 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4480
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 370/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CluMSID 1.20.0  (landing page)
Tobias Depke
Snapshot Date: 2024-10-16 14:00 -0400 (Wed, 16 Oct 2024)
git_url: https://git.bioconductor.org/packages/CluMSID
git_branch: RELEASE_3_19
git_last_commit: 0865238
git_last_commit_date: 2024-04-30 11:11:45 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.6.6 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for CluMSID on merida1

To the developers/maintainers of the CluMSID package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CluMSID.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: CluMSID
Version: 1.20.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CluMSID
StartedAt: 2024-10-16 18:00:50 -0400 (Wed, 16 Oct 2024)
EndedAt: 2024-10-16 18:04:07 -0400 (Wed, 16 Oct 2024)
EllapsedTime: 196.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CluMSID
###
##############################################################################
##############################################################################


* checking for file ‘CluMSID/DESCRIPTION’ ... OK
* preparing ‘CluMSID’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CluMSID_DI-MSMS.Rmd’ using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "CluMSID DI-MS/MS Tutorial", and the latter is "Clustering Spectra from High Resolution DI-MS/MS Data Using CluMSID". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘CluMSID_DI-MSMS.Rmd’

--- re-building ‘CluMSID_GC-EI-MS.Rmd’ using rmarkdown

Quitting from lines 127-130 [runCAMERA] (CluMSID_GC-EI-MS.Rmd)
Error: processing vignette 'CluMSID_GC-EI-MS.Rmd' failed with diagnostics:
wrong args for environment subassignment
--- failed re-building ‘CluMSID_GC-EI-MS.Rmd’

--- re-building ‘CluMSID_MTBLS.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpCemxAl/Rf12769754de3c2': No such file or directory

Quitting from lines 14-20 [setup] (CluMSID_MTBLS.Rmd)
Error: processing vignette 'CluMSID_MTBLS.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘CluMSID_MTBLS.Rmd’

--- re-building ‘CluMSID_lowres-LC-MSMS.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpCemxAl/Rf1276927876e57': No such file or directory

Quitting from lines 14-20 [setup] (CluMSID_lowres-LC-MSMS.Rmd)
Error: processing vignette 'CluMSID_lowres-LC-MSMS.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘CluMSID_lowres-LC-MSMS.Rmd’

--- re-building ‘CluMSID_tutorial.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpCemxAl/Rf12769176bac52': No such file or directory

Quitting from lines 14-19 [setup] (CluMSID_tutorial.Rmd)
Error: processing vignette 'CluMSID_tutorial.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘CluMSID_tutorial.Rmd’

SUMMARY: processing the following files failed:
  ‘CluMSID_GC-EI-MS.Rmd’ ‘CluMSID_MTBLS.Rmd’
  ‘CluMSID_lowres-LC-MSMS.Rmd’ ‘CluMSID_tutorial.Rmd’

Error: Vignette re-building failed.
Execution halted