Andrea Gobbi
| Snapshot Date: 2024-05-08 14:00:19 -0400 (Wed, 08 May 2024) |
| git_url: https://git.bioconductor.org/packages/BiRewire |
| git_branch: RELEASE_3_19 |
| git_last_commit: a8b3eb6 |
| git_last_commit_date: 2024-04-30 10:33:26 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-05-09 11:40:37 -0400 (Thu, 09 May 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4748 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup" | 4484 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4514 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" | 4480 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 223/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| BiRewire 3.36.0 (landing page) Andrea Gobbi
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | WARNINGS | ||||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the BiRewire package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BiRewire.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: BiRewire |
| Version: 3.36.0 |
| Command: /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD INSTALL BiRewire |
| StartedAt: 2024-05-08 20:04:53 -0000 (Wed, 08 May 2024) |
| EndedAt: 2024-05-08 20:05:11 -0000 (Wed, 08 May 2024) |
| EllapsedTime: 18.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
###
### /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD INSTALL BiRewire
###
##############################################################################
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* installing to library ‘/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library’
* installing *source* package ‘BiRewire’ ...
** using staged installation
** libs
using C compiler: ‘gcc (GCC) 10.3.1’
gcc -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -c BiRewire.c -o BiRewire.o
BiRewire.c: In function ‘analysis’:
BiRewire.c:149:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘time_t’ {aka ‘long int’} [-Wformat=]
149 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long int}
| %ld
BiRewire.c: In function ‘analysis_ex’:
BiRewire.c:221:23: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘time_t’ {aka ‘long int’} [-Wformat=]
221 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long int}
| %ld
BiRewire.c:229:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘time_t’ {aka ‘long int’} [-Wformat=]
229 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long int}
| %ld
BiRewire.c: In function ‘rewire_bipartite’:
BiRewire.c:280:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘time_t’ {aka ‘long int’} [-Wformat=]
280 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long int}
| %ld
BiRewire.c: In function ‘rewire_bipartite_ex’:
BiRewire.c:332:23: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘time_t’ {aka ‘long int’} [-Wformat=]
332 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long int}
| %ld
BiRewire.c:339:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘time_t’ {aka ‘long int’} [-Wformat=]
339 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long int}
| %ld
BiRewire.c: In function ‘rewire_sparse_bipartite’:
BiRewire.c:402:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘time_t’ {aka ‘long int’} [-Wformat=]
402 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long int}
| %ld
BiRewire.c: In function ‘rewire_sparse_bipartite_ex’:
BiRewire.c:454:23: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘time_t’ {aka ‘long int’} [-Wformat=]
454 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long int}
| %ld
BiRewire.c:461:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘time_t’ {aka ‘long int’} [-Wformat=]
461 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long int}
| %ld
BiRewire.c: In function ‘analysis_undirected’:
BiRewire.c:588:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘time_t’ {aka ‘long int’} [-Wformat=]
588 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long int}
| %ld
BiRewire.c: In function ‘analysis_undirected_ex’:
BiRewire.c:652:23: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘time_t’ {aka ‘long int’} [-Wformat=]
652 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long int}
| %ld
BiRewire.c:737:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘time_t’ {aka ‘long int’} [-Wformat=]
737 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long int}
| %ld
BiRewire.c: In function ‘rewire’:
BiRewire.c:844:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘time_t’ {aka ‘long int’} [-Wformat=]
844 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long int}
| %ld
BiRewire.c: In function ‘rewire_ex’:
BiRewire.c:893:23: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘time_t’ {aka ‘long int’} [-Wformat=]
893 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long int}
| %ld
BiRewire.c:962:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘time_t’ {aka ‘long int’} [-Wformat=]
962 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long int}
| %ld
BiRewire.c: In function ‘rewire_sparse’:
BiRewire.c:1066:16: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
1066 | if( a!=c && b!=d & a!=d && c!=b && (( ad==1 && cb==1 )|| (ac==1 && bd==1) )) {
| ~^~~
BiRewire.c:1096:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘time_t’ {aka ‘long int’} [-Wformat=]
1096 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long int}
| %ld
BiRewire.c: In function ‘rewire_sparse_ex’:
BiRewire.c:1144:23: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘time_t’ {aka ‘long int’} [-Wformat=]
1144 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long int}
| %ld
BiRewire.c:1149:16: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
1149 | if( a!=c && b!=d & a!=d && c!=b && (( ad==1 && cb==1 )|| (ac==1 && bd==1) )) {
| ~^~~
BiRewire.c:1183:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘time_t’ {aka ‘long int’} [-Wformat=]
1183 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~^ ~~~~~~~~~~~
| | |
| int time_t {aka long int}
| %ld
gcc -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -c interface.c -o interface.o
interface.c: In function ‘R_rewire_bipartite’:
interface.c:105:11: warning: too many arguments for format [-Wformat-extra-args]
105 | warning("Reached the maximum number admissible of iterations!\n",asInteger(MAXITER));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
interface.c: In function ‘R_rewire_sparse_bipartite’:
interface.c:147:11: warning: too many arguments for format [-Wformat-extra-args]
147 | warning("Reached the maximum number admissible of iterations!\n",asInteger(MAXITER));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
interface.c: In function ‘R_rewire’:
interface.c:252:11: warning: too many arguments for format [-Wformat-extra-args]
252 | warning("Reached the maximum number admissible of iterations!\n",asInteger(MAXITER));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
interface.c: In function ‘R_rewire_sparse’:
interface.c:296:11: warning: too many arguments for format [-Wformat-extra-args]
296 | warning("Reached the maximum number admissible of iterations!\n",asInteger(MAXITER));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -shared -L/home/biocbuild/R/R-beta-2024-04-15_r86425/lib -L/usr/local/lib -o BiRewire.so BiRewire.o interface.o -L/home/biocbuild/R/R-beta-2024-04-15_r86425/lib -lR
installing to /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/00LOCK-BiRewire/00new/BiRewire/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BiRewire)