Matthew Ritchie
| Snapshot Date: 2024-03-01 10:45:01 -0500 (Fri, 01 Mar 2024) |
| git_url: https://git.bioconductor.org/packages/RNAseq123 |
| git_branch: RELEASE_3_18 |
| git_last_commit: 40f3611 |
| git_last_commit_date: 2023-10-24 08:46:58 -0500 (Tue, 24 Oct 2023) |
| Back to Workflows build report for BioC 3.18 |
This page was generated on 2024-03-01 14:00:10 -0500 (Fri, 01 Mar 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.3.2 Patched (2023-11-13 r85521) -- "Eye Holes" | 4692 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.2 (2023-10-31 ucrt) -- "Eye Holes" | 4445 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.3.2 Patched (2023-11-01 r85457) -- "Eye Holes" | 4466 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 20/30 | Hostname | OS / Arch | INSTALL | BUILD | ||||||||
| RNAseq123 1.26.0 (landing page) Matthew Ritchie
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | | |||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | ERROR | ERROR | |||||||||
|
To the developers/maintainers of the RNAseq123 package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: RNAseq123 |
| Version: 1.26.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL RNAseq123 |
| StartedAt: 2024-03-01 11:00:40 -0500 (Fri, 01 Mar 2024) |
| EndedAt: 2024-03-01 11:00:53 -0500 (Fri, 01 Mar 2024) |
| EllapsedTime: 12.7 seconds |
| RetCode: 1 |
| Status: ERROR |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL RNAseq123 ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library’ * installing *source* package ‘RNAseq123’ ... ** using staged installation ** inst ** help No man pages found in package ‘RNAseq123’ *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Error: package or namespace load failed for ‘BiocWorkflowTools’ in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/git2r/libs/git2r.so': dlopen(/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/git2r/libs/git2r.so, 0x0006): Library not loaded: '/usr/local/opt/libgit2/lib/libgit2.1.4.dylib' Referenced from: '/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/git2r/libs/git2r.so' Reason: tried: '/usr/local/opt/libgit2/lib/libgit2.1.4.dylib' (no such file), '/Library/Frameworks/R.framework/Resources/lib/libgit2.1.4.dylib' (no such file), '/usr/local/jdk-18.jdk/Contents/Home/lib/server/libgit2.1.4.dylib' (no such file), '/usr/local/Cellar/libgit2/1.7.1/lib/libgit2.1.4.dylib' (no such file), '/Library/Frameworks/R.framework/Resources/lib/libgit2.1.4.dylib' (no such file), '/usr/local/jdk-18.jdk/Contents/Home/lib/server/libgit2.1.4.dylib' (no such file) Error : package ‘BiocWorkflowTools’ could not be loaded Error: loading failed Execution halted ERROR: loading failed * removing ‘/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RNAseq123’