| Back to Build/check report for BioC 3.18 experimental data |
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This page was generated on 2024-04-16 14:51:29 -0400 (Tue, 16 Apr 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4676 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 241/429 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
Juan C. Rodriguez
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | ERROR | ||||||||
|
To the developers/maintainers of the MIGSAdata package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: MIGSAdata |
| Version: 1.26.0 |
| Command: /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:MIGSAdata.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings MIGSAdata_1.26.0.tar.gz |
| StartedAt: 2024-04-16 11:55:23 -0400 (Tue, 16 Apr 2024) |
| EndedAt: 2024-04-16 11:56:18 -0400 (Tue, 16 Apr 2024) |
| EllapsedTime: 55.7 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: MIGSAdata.Rcheck |
| Warnings: NA |
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### Running command:
###
### /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:MIGSAdata.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings MIGSAdata_1.26.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.18-data-experiment/meat/MIGSAdata.Rcheck’
* using R version 4.3.3 (2024-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* checking for file ‘MIGSAdata/DESCRIPTION’ ... OK
* this is package ‘MIGSAdata’ version ‘1.26.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MIGSAdata’ can be installed ... WARNING
Found the following significant warnings:
Warning: Package 'MIGSAdata' is deprecated and will be removed from Bioconductor
See ‘/home/biocbuild/bbs-3.18-data-experiment/meat/MIGSAdata.Rcheck/00install.out’ for details.
* checking installed package size ... NOTE
installed size is 80.5Mb
sub-directories of 1Mb or more:
data 80.4Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
ERROR
Running the tests in ‘tests/runTests.R’ failed.
Complete output:
> BiocGenerics:::testPackage("MIGSAdata")
Error in library("RUnit", quietly = TRUE) :
there is no package called 'RUnit'
Calls: <Anonymous> -> library
In addition: Warning message:
Package 'MIGSAdata' is deprecated and will be removed from Bioconductor
version 3.19
Execution halted
* checking PDF version of manual ... OK
* DONE
Status: 1 ERROR, 1 WARNING, 1 NOTE
See
‘/home/biocbuild/bbs-3.18-data-experiment/meat/MIGSAdata.Rcheck/00check.log’
for details.
MIGSAdata.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD INSTALL MIGSAdata ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.18-bioc/R/site-library’ * installing *source* package ‘MIGSAdata’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location Warning: Package 'MIGSAdata' is deprecated and will be removed from Bioconductor version 3.19 ** testing if installed package can be loaded from final location Warning: Package 'MIGSAdata' is deprecated and will be removed from Bioconductor version 3.19 ** testing if installed package keeps a record of temporary installation path * DONE (MIGSAdata)
MIGSAdata.Rcheck/tests/runTests.Rout.fail
R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("MIGSAdata")
Error in library("RUnit", quietly = TRUE) :
there is no package called 'RUnit'
Calls: <Anonymous> -> library
In addition: Warning message:
Package 'MIGSAdata' is deprecated and will be removed from Bioconductor
version 3.19
Execution halted