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This page was generated on 2024-04-16 14:51:29 -0400 (Tue, 16 Apr 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4676 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 188/429 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
HIVcDNAvantWout03 1.42.0 (landing page) Chris Fraley
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||
To the developers/maintainers of the HIVcDNAvantWout03 package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: HIVcDNAvantWout03 |
Version: 1.42.0 |
Command: /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:HIVcDNAvantWout03.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings HIVcDNAvantWout03_1.42.0.tar.gz |
StartedAt: 2024-04-16 11:41:32 -0400 (Tue, 16 Apr 2024) |
EndedAt: 2024-04-16 11:41:43 -0400 (Tue, 16 Apr 2024) |
EllapsedTime: 11.0 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: HIVcDNAvantWout03.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:HIVcDNAvantWout03.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings HIVcDNAvantWout03_1.42.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.18-data-experiment/meat/HIVcDNAvantWout03.Rcheck’ * using R version 4.3.3 (2024-02-29) * using platform: x86_64-pc-linux-gnu (64-bit) * R was compiled by gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 * running under: Ubuntu 22.04.4 LTS * using session charset: UTF-8 * checking for file ‘HIVcDNAvantWout03/DESCRIPTION’ ... OK * this is package ‘HIVcDNAvantWout03’ version ‘1.42.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HIVcDNAvantWout03’ can be installed ... OK * checking installed package size ... NOTE installed size is 5.3Mb sub-directories of 1Mb or more: data 5.2Mb * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... NOTE Output for data("hiv1raw", package = "HIVcDNAvantWout03"): Read 450000 items Output for data("hiv2raw", package = "HIVcDNAvantWout03"): Read 450000 items * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... WARNING Files in the 'vignettes' directory but no files in 'inst/doc': ‘hivData.pdf’ Package has no Sweave vignette sources and no VignetteBuilder field. * checking examples ... NONE * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 2 NOTEs See ‘/home/biocbuild/bbs-3.18-data-experiment/meat/HIVcDNAvantWout03.Rcheck/00check.log’ for details.
HIVcDNAvantWout03.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD INSTALL HIVcDNAvantWout03 ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.18-bioc/R/site-library’ * installing *source* package ‘HIVcDNAvantWout03’ ... ** using staged installation ** data ** help *** installing help indices ** building package indices Read 450000 items Read 450000 items ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HIVcDNAvantWout03)